Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HXW73_RS03600 Genome accession   NZ_CP058321
Coordinates   751736..752815 (+) Length   359 a.a.
NCBI ID   WP_186254940.1    Uniprot ID   A0A7G7Z5S4
Organism   Halomonas sp. SH5A2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 746736..757815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXW73_RS03585 (HXW73_03590) fdxA 748226..748549 (-) 324 WP_092829671.1 ferredoxin FdxA -
  HXW73_RS03590 (HXW73_03595) mutS 748710..751001 (-) 2292 WP_186254938.1 DNA mismatch repair protein MutS -
  HXW73_RS03595 (HXW73_03600) - 751112..751645 (+) 534 WP_186254939.1 CinA family protein -
  HXW73_RS03600 (HXW73_03605) recA 751736..752815 (+) 1080 WP_186254940.1 recombinase RecA Machinery gene
  HXW73_RS03605 (HXW73_03610) - 752831..753292 (+) 462 WP_186254941.1 regulatory protein RecX -
  HXW73_RS03610 (HXW73_03615) alaS 753450..756059 (+) 2610 WP_186254942.1 alanine--tRNA ligase -
  HXW73_RS03615 (HXW73_03620) - 756160..757410 (+) 1251 WP_186254943.1 aspartate kinase -
  HXW73_RS03620 (HXW73_03625) csrA 757603..757791 (+) 189 WP_066321318.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38408.71 Da        Isoelectric Point: 5.1593

>NTDB_id=463757 HXW73_RS03600 WP_186254940.1 751736..752815(+) (recA) [Halomonas sp. SH5A2]
MAQDDNRTKALNAALSQIDRQFGKGTVMRLGDAPRVVMPSVSTGSLGLDIALGIGGLPYGRVAEIFGPESSGKTTLTLSV
IAQAQKQGKVCAFVDAEHALDPSYAEKLGVNLDDLLVSQPDTGEQALEITDMLVRSGGVDVIVIDSVAALTPRAEIEGEM
GDAHVGLQARLMSQALRKISGNIKNANCLVVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRTGSVKVGDEVTG
NETRVKVVKNKVAPPFRQAEFQILYGKGIYHAGEVVDLGVQQNLVDKAGAWYSYKGKKIGQGKANAAQYLEEHPDVMEEI
ESQIRAQLLAQPEPKKEEAAKASAKTEEAADANAEDDLL

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=463757 HXW73_RS03600 WP_186254940.1 751736..752815(+) (recA) [Halomonas sp. SH5A2]
ATGGCTCAGGATGATAATCGCACCAAGGCGCTCAACGCTGCGCTAAGCCAGATTGATCGCCAGTTTGGTAAAGGCACGGT
CATGCGGCTGGGTGATGCCCCGCGCGTGGTCATGCCGTCGGTGTCCACCGGTTCGCTGGGTTTGGATATTGCCCTCGGTA
TTGGCGGCCTGCCGTATGGTCGGGTAGCTGAAATTTTCGGCCCGGAGTCCTCGGGTAAGACGACCCTGACCCTGTCGGTG
ATTGCGCAAGCCCAGAAACAGGGCAAAGTCTGCGCGTTCGTGGATGCCGAGCATGCGCTCGACCCAAGCTACGCAGAAAA
GCTGGGCGTTAATCTGGACGACCTGCTGGTGTCTCAGCCGGATACCGGCGAACAGGCACTCGAAATCACCGATATGCTGG
TGCGGTCTGGCGGTGTCGATGTGATCGTGATCGACTCGGTGGCGGCGCTGACCCCACGAGCTGAAATCGAAGGCGAAATG
GGCGACGCCCACGTTGGCCTGCAGGCACGTTTGATGTCGCAAGCGTTACGCAAGATCAGTGGCAATATCAAGAATGCCAA
CTGCTTGGTGGTGTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGTAGCCCCGAAACCACCACCGGCGGTA
ACGCGCTGAAGTTTTACTCAAGCGTGCGGCTGGACATTCGACGCACCGGGTCGGTGAAAGTTGGCGACGAGGTCACCGGT
AACGAAACCCGCGTTAAAGTGGTCAAGAACAAGGTGGCACCGCCGTTCCGTCAGGCCGAATTCCAGATTCTCTACGGCAA
AGGCATCTACCACGCCGGCGAAGTCGTCGACCTGGGCGTGCAGCAGAACCTGGTGGACAAAGCCGGTGCCTGGTACAGCT
ACAAGGGTAAAAAGATCGGCCAGGGCAAGGCCAATGCGGCCCAGTACCTGGAAGAACACCCTGACGTCATGGAAGAGATC
GAAAGCCAGATTCGCGCTCAACTGCTTGCCCAGCCTGAGCCGAAGAAAGAAGAGGCTGCCAAGGCGTCTGCCAAGACGGA
AGAAGCCGCTGACGCGAACGCCGAAGACGATCTGCTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G7Z5S4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

78.286

97.493

0.763
  recA Acinetobacter baylyi ADP1

72.414

96.936

0.702
  recA Acinetobacter baumannii D1279779

74.233

90.808

0.674
  recA Vibrio cholerae strain A1552

68.035

94.986

0.646
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.035

94.986

0.646
  recA Glaesserella parasuis strain SC1401

65.254

98.607

0.643
  recA Neisseria gonorrhoeae MS11

70.279

89.972

0.632
  recA Neisseria gonorrhoeae MS11

70.279

89.972

0.632
  recA Neisseria gonorrhoeae strain FA1090

70.279

89.972

0.632
  recA Ralstonia pseudosolanacearum GMI1000

70.476

87.744

0.618
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.19

90.808

0.574
  recA Helicobacter pylori 26695

61.078

93.036

0.568
  recA Helicobacter pylori strain NCTC11637

60.479

93.036

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.644

93.872

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.187

89.136

0.554
  recA Streptococcus mitis NCTC 12261

56.125

97.772

0.549
  recA Streptococcus pneumoniae Rx1

56.125

97.772

0.549
  recA Streptococcus pneumoniae D39

56.125

97.772

0.549
  recA Streptococcus pneumoniae R6

56.125

97.772

0.549
  recA Streptococcus pneumoniae TIGR4

56.125

97.772

0.549
  recA Streptococcus mitis SK321

56.125

97.772

0.549
  recA Latilactobacillus sakei subsp. sakei 23K

60.429

90.808

0.549
  recA Streptococcus mutans UA159

55.085

98.607

0.543
  recA Streptococcus pyogenes NZ131

58.232

91.365

0.532
  recA Lactococcus lactis subsp. cremoris KW2

57.362

90.808

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.231

90.529

0.518