Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HUU85_RS05545 | Genome accession | NZ_CP058302 |
| Coordinates | 1156020..1157081 (-) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli strain AH65 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1153587..1205191 | 1156020..1157081 | within | 0 |
Gene organization within MGE regions
Location: 1153587..1205191
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUU85_RS05540 (HUU85_05550) | recX | 1155451..1155951 (-) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| HUU85_RS05545 (HUU85_05555) | recA | 1156020..1157081 (-) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| HUU85_RS05550 (HUU85_05560) | pncC | 1157161..1157658 (-) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| HUU85_RS05555 (HUU85_05565) | mltB | 1157803..1158888 (-) | 1086 | WP_000476837.1 | lytic murein transglycosylase B | - |
| HUU85_RS05560 (HUU85_05570) | srlA | 1159144..1159707 (+) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| HUU85_RS05565 (HUU85_05575) | srlE | 1159704..1160663 (+) | 960 | WP_176256472.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| HUU85_RS05570 (HUU85_05580) | srlB | 1160674..1161045 (+) | 372 | WP_000216201.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| HUU85_RS05575 (HUU85_05585) | srlD | 1161049..1161828 (+) | 780 | WP_001077351.1 | sorbitol-6-phosphate dehydrogenase | - |
| HUU85_RS05580 (HUU85_05590) | gutM | 1161934..1162293 (+) | 360 | WP_000252907.1 | transcriptional regulator GutM | - |
| HUU85_RS05585 (HUU85_05595) | srlR | 1162360..1163133 (+) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| HUU85_RS05590 (HUU85_05600) | gutQ | 1163126..1164091 (+) | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
| HUU85_RS05595 (HUU85_05605) | norR | 1164088..1165602 (-) | 1515 | WP_000010746.1 | nitric oxide reductase transcriptional regulator NorR | - |
| HUU85_RS05600 (HUU85_05610) | norV | 1165789..1167228 (+) | 1440 | WP_000029611.1 | anaerobic nitric oxide reductase flavorubredoxin | - |
| HUU85_RS05605 (HUU85_05615) | norW | 1167225..1168358 (+) | 1134 | WP_000064739.1 | NADH:flavorubredoxin reductase NorW | - |
| HUU85_RS05610 (HUU85_05620) | hypF | 1168486..1170738 (-) | 2253 | WP_001107701.1 | carbamoyltransferase HypF | - |
| HUU85_RS05615 (HUU85_05625) | hydN | 1170891..1171418 (-) | 528 | WP_001078777.1 | electron transport protein HydN | - |
| HUU85_RS05620 (HUU85_05630) | ascG | 1171567..1172577 (-) | 1011 | WP_001394680.1 | DNA-binding transcriptional regulator AscG | - |
| HUU85_RS05625 (HUU85_05635) | ascF | 1172837..1174294 (+) | 1458 | WP_001107828.1 | PTS cellobiose/arbutin/salicin transporter subunit IIBC | - |
| HUU85_RS05630 (HUU85_05640) | ascB | 1174303..1175727 (+) | 1425 | WP_000110363.1 | 6-phospho-beta-glucosidase AscB | - |
| HUU85_RS05635 (HUU85_05645) | hycI | 1175886..1176356 (-) | 471 | WP_000132961.1 | hydrogenase maturation peptidase HycI | - |
| HUU85_RS05640 (HUU85_05650) | hycH | 1176349..1176759 (-) | 411 | WP_001291921.1 | formate hydrogenlyase assembly protein HycH | - |
| HUU85_RS05645 (HUU85_05655) | hycG | 1176756..1177523 (-) | 768 | WP_000067392.1 | formate hydrogenlyase subunit HycG | - |
| HUU85_RS05650 (HUU85_05660) | hycF | 1177523..1178065 (-) | 543 | WP_000493785.1 | formate hydrogenlyase subunit HycF | - |
| HUU85_RS05655 (HUU85_05665) | hycE | 1178075..1179784 (-) | 1710 | WP_001288122.1 | formate hydrogenlyase subunit HycE | - |
| HUU85_RS05660 (HUU85_05670) | hycD | 1179802..1180725 (-) | 924 | WP_000115199.1 | formate hydrogenlyase subunit HycD | - |
| HUU85_RS05665 (HUU85_05675) | hycC | 1180728..1182554 (-) | 1827 | WP_001274386.1 | formate hydrogenlyase subunit 3 | - |
| HUU85_RS05670 (HUU85_05680) | hycB | 1182551..1183162 (-) | 612 | WP_001079186.1 | formate hydrogenlyase subunit HycB | - |
| HUU85_RS05675 (HUU85_05685) | hycA | 1183287..1183748 (-) | 462 | WP_000158056.1 | formate hydrogenlyase regulator HycA | - |
| HUU85_RS05680 (HUU85_05690) | hypA | 1183960..1184310 (+) | 351 | WP_001299100.1 | hydrogenase maturation nickel metallochaperone HypA | - |
| HUU85_RS05685 (HUU85_05695) | hypB | 1184314..1185186 (+) | 873 | WP_000337665.1 | hydrogenase nickel incorporation protein HypB | - |
| HUU85_RS05690 (HUU85_05700) | hypC | 1185177..1185449 (+) | 273 | WP_000334881.1 | hydrogenase 3 maturation protein HypC | - |
| HUU85_RS05695 (HUU85_05705) | hypD | 1185449..1186570 (+) | 1122 | WP_001212982.1 | hydrogenase formation protein HypD | - |
| HUU85_RS05700 (HUU85_05710) | hypE | 1186567..1187577 (+) | 1011 | WP_001059922.1 | hydrogenase maturation carbamoyl dehydratase HypE | - |
| HUU85_RS05705 (HUU85_05715) | flhA | 1187651..1189729 (+) | 2079 | WP_001301332.1 | formate hydrogenlyase transcriptional activator FlhA | - |
| HUU85_RS05710 (HUU85_05720) | ygbA | 1189766..1190119 (-) | 354 | WP_000015497.1 | nitrous oxide-stimulated promoter family protein | - |
| HUU85_RS05715 (HUU85_05725) | - | 1190196..1190330 (-) | 135 | WP_000611932.1 | hypothetical protein | - |
| HUU85_RS05720 (HUU85_05730) | - | 1191192..1193000 (-) | 1809 | WP_176256471.1 | DUF4209 domain-containing protein | - |
| HUU85_RS05725 (HUU85_05735) | - | 1193261..1193698 (+) | 438 | WP_071791370.1 | ATP-binding protein | - |
| HUU85_RS05730 (HUU85_05740) | - | 1193667..1194866 (+) | 1200 | WP_032229043.1 | relaxase/mobilization nuclease domain-containing protein | - |
| HUU85_RS05735 (HUU85_05745) | - | 1195046..1195324 (+) | 279 | WP_023486609.1 | hypothetical protein | - |
| HUU85_RS05740 (HUU85_05750) | - | 1195361..1195747 (+) | 387 | WP_032229044.1 | hypothetical protein | - |
| HUU85_RS05745 (HUU85_05755) | - | 1195774..1196094 (+) | 321 | WP_023486611.1 | hypothetical protein | - |
| HUU85_RS05750 (HUU85_05760) | - | 1196214..1196639 (-) | 426 | WP_176256470.1 | hypothetical protein | - |
| HUU85_RS05755 (HUU85_05765) | - | 1197551..1198084 (+) | 534 | WP_176256469.1 | helix-turn-helix domain-containing protein | - |
| HUU85_RS05760 (HUU85_05770) | - | 1198544..1200661 (+) | 2118 | WP_023486613.1 | retron Eco8 family effector endonuclease | - |
| HUU85_RS05765 (HUU85_05775) | - | 1200828..1201931 (+) | 1104 | WP_023486614.1 | reverse transcriptase family protein | - |
| HUU85_RS05770 (HUU85_05780) | - | 1202140..1202718 (-) | 579 | WP_032229050.1 | hypothetical protein | - |
| HUU85_RS05775 (HUU85_05785) | - | 1202730..1204187 (-) | 1458 | WP_023486615.1 | tyrosine-type recombinase/integrase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=463596 HUU85_RS05545 WP_000963143.1 1156020..1157081(-) (recA) [Escherichia coli strain AH65]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=463596 HUU85_RS05545 WP_000963143.1 1156020..1157081(-) (recA) [Escherichia coli strain AH65]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.