Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HHA29_RS00060 Genome accession   NZ_CP058274
Coordinates   9515..10594 (+) Length   359 a.a.
NCBI ID   WP_003013734.1    Uniprot ID   A0A0B3VNX5
Organism   Francisella tularensis subsp. holarctica strain 12T0058     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4515..15594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHA29_RS00030 (HHA29_00030) - 4680..6376 (-) 1697 Protein_5 alpha-keto acid decarboxylase family protein -
  HHA29_RS00035 (HHA29_00035) - 6630..6833 (-) 204 WP_003024316.1 hypothetical protein -
  HHA29_RS00040 (HHA29_00040) sppA 6907..7830 (+) 924 WP_003013655.1 signal peptide peptidase SppA -
  HHA29_RS00045 (HHA29_00045) - 7920..8459 (+) 540 WP_011457328.1 OmpH family outer membrane protein -
  HHA29_RS00050 (HHA29_00050) - 8595..9017 (+) 423 WP_003013699.1 rhodanese-like domain-containing protein -
  HHA29_RS00055 (HHA29_00055) secB 9044..9493 (+) 450 WP_003013731.1 protein-export chaperone SecB -
  HHA29_RS00060 (HHA29_00060) recA 9515..10594 (+) 1080 WP_003013734.1 recombinase RecA Machinery gene
  HHA29_RS00065 (HHA29_00065) - 10581..11033 (+) 453 WP_003013736.1 regulatory protein RecX -
  HHA29_RS00070 (HHA29_00070) ssb 11206..11682 (+) 477 WP_003013740.1 single-stranded DNA-binding protein Machinery gene
  HHA29_RS00075 (HHA29_00075) - 11788..12942 (+) 1155 WP_003013741.1 acetate/propionate family kinase -
  HHA29_RS00080 (HHA29_00080) pta 12952..15048 (+) 2097 WP_003013744.1 phosphate acetyltransferase -
  HHA29_RS09660 - 15063..15527 (+) 465 WP_003017565.1 aldehyde dehydrogenase family protein -

Sequence

Protein


Download         Length: 359 a.a.        Molecular weight: 38833.58 Da        Isoelectric Point: 6.1804

>NTDB_id=463379 HHA29_RS00060 WP_003013734.1 9515..10594(+) (recA) [Francisella tularensis subsp. holarctica strain 12T0058]
MSKEKALESALSQIEKQFGKGAIMRLGDQEAAHDIDVIPSGIIALDVALGIGGYPKGRIIEIYGHESSGKTTLTLLAIAQ
CQKQGGTAAFVDAEHALDPKYAKLLGVDVDNLIVSQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGDMGDS
HMGLQARLMSQALRKLTANIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLEVKKGGSIKDGIDVSGNEI
KVKVVKNKVAPPFKQADFELIYGEGISLEAELIDLGAKYNIIEKSGAWYSYKGKKIGQGKEKSKEYLKENTAERDEIERA
ILELLLPNKYSNKDSNDSPKEGSKIKTKVNPAVTQDELI

Nucleotide


Download         Length: 1080 bp        

>NTDB_id=463379 HHA29_RS00060 WP_003013734.1 9515..10594(+) (recA) [Francisella tularensis subsp. holarctica strain 12T0058]
ATGAGTAAAGAAAAGGCGCTAGAATCAGCCTTATCACAGATTGAAAAGCAATTTGGTAAAGGCGCTATCATGAGATTAGG
AGATCAAGAAGCTGCTCATGATATTGATGTTATACCTTCCGGTATTATTGCACTTGATGTGGCACTAGGAATAGGAGGCT
ATCCAAAAGGTCGAATTATTGAGATATATGGTCATGAATCATCAGGTAAGACAACATTGACACTTTTAGCTATTGCACAA
TGCCAAAAGCAAGGCGGTACTGCAGCATTTGTTGATGCTGAGCATGCACTAGATCCAAAATATGCAAAGCTTTTAGGTGT
TGATGTTGATAATCTGATCGTGTCACAGCCGGATACGGGTGAGCAAGCTTTAGAGATTGCTGATATGTTGGTACGTTCTG
GAGGAGTTGATATTGTAGTAATTGACTCTGTTGCTGCACTTACGCCAAAGGCAGAGATTGAGGGTGACATGGGCGACTCG
CACATGGGCTTACAAGCAAGATTAATGTCACAAGCACTAAGAAAACTAACGGCAAATATCAAGCGCTCAAATACTCTAGT
GATATTCATTAACCAAATTCGTATGAAGATCGGGGTTATGTTTGGTAACCCTGAAACTACAACTGGTGGTAATGCGCTTA
AATTCTATTCATCGGTAAGACTTGAAGTCAAAAAGGGTGGTAGCATCAAAGATGGTATTGATGTTAGTGGTAATGAAATA
AAAGTTAAGGTTGTCAAAAACAAAGTTGCCCCACCTTTTAAACAAGCTGACTTTGAGCTTATTTATGGCGAGGGTATTTC
GCTTGAGGCTGAGCTTATTGATTTGGGCGCTAAGTATAACATTATTGAGAAGTCTGGTGCTTGGTATAGCTATAAGGGTA
AAAAGATTGGTCAAGGCAAAGAGAAGTCAAAAGAGTATTTAAAAGAAAATACTGCTGAACGTGATGAGATTGAAAGAGCG
ATTTTAGAACTCTTGCTACCAAATAAATATTCTAATAAAGATAGTAATGATAGTCCTAAAGAAGGTTCTAAAATCAAAAC
TAAAGTAAATCCAGCAGTTACTCAAGATGAGCTTATCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B3VNX5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

66.176

94.708

0.627
  recA Acinetobacter baumannii D1279779

68.923

90.529

0.624
  recA Neisseria gonorrhoeae MS11

69.565

89.694

0.624
  recA Neisseria gonorrhoeae MS11

69.565

89.694

0.624
  recA Neisseria gonorrhoeae strain FA1090

69.565

89.694

0.624
  recA Glaesserella parasuis strain SC1401

65.882

94.708

0.624
  recA Pseudomonas stutzeri DSM 10701

66.567

93.315

0.621
  recA Vibrio cholerae strain A1552

66.462

90.529

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.462

90.529

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.29

89.415

0.602
  recA Streptococcus pneumoniae Rx1

58.743

100

0.599
  recA Streptococcus pneumoniae TIGR4

58.743

100

0.599
  recA Streptococcus pneumoniae R6

58.743

100

0.599
  recA Streptococcus pneumoniae D39

58.743

100

0.599
  recA Ralstonia pseudosolanacearum GMI1000

67.628

86.908

0.588
  recA Bacillus subtilis subsp. subtilis str. 168

68.182

85.794

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

91.365

0.582
  recA Helicobacter pylori 26695

63.415

91.365

0.579
  recA Helicobacter pylori strain NCTC11637

63.11

91.365

0.577
  recA Streptococcus mitis NCTC 12261

63.158

89.972

0.568
  recA Streptococcus mitis SK321

62.848

89.972

0.565
  recA Streptococcus pyogenes NZ131

62.539

89.972

0.563
  recA Streptococcus mutans UA159

61.61

89.972

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

90.529

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.587

87.744

0.54
  recA Lactococcus lactis subsp. cremoris KW2

59.443

89.972

0.535