Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HW369_RS19160 Genome accession   NZ_CP058255
Coordinates   3641693..3642724 (+) Length   343 a.a.
NCBI ID   WP_195694786.1    Uniprot ID   -
Organism   Priestia megaterium strain BHS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3636693..3647724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW369_RS19125 - 3637174..3637734 (+) 561 WP_195694781.1 cysteine dioxygenase family protein -
  HW369_RS19130 - 3637933..3638367 (-) 435 WP_195694782.1 ArsI/CadI family heavy metal resistance metalloenzyme -
  HW369_RS19135 - 3638404..3638733 (-) 330 WP_195694783.1 metalloregulator ArsR/SmtB family transcription factor -
  HW369_RS19140 - 3639138..3639485 (+) 348 WP_153254006.1 metalloregulator ArsR/SmtB family transcription factor -
  HW369_RS19145 - 3639504..3640802 (+) 1299 WP_195694784.1 arsenic transporter -
  HW369_RS19150 arsC 3640827..3641249 (+) 423 WP_013056447.1 arsenate reductase (thioredoxin) -
  HW369_RS19155 - 3641547..3641696 (+) 150 WP_195694785.1 hypothetical protein -
  HW369_RS19160 recA 3641693..3642724 (+) 1032 WP_195694786.1 recombinase RecA Machinery gene
  HW369_RS19165 speG 3643213..3643737 (+) 525 WP_013056444.1 spermidine N1-acetyltransferase -
  HW369_RS19170 - 3644349..3645110 (-) 762 WP_195694787.1 class I SAM-dependent methyltransferase -
  HW369_RS19175 - 3645337..3646155 (-) 819 WP_195694788.1 mechanosensitive ion channel domain-containing protein -
  HW369_RS19180 - 3646385..3647413 (-) 1029 WP_195694789.1 serine hydrolase domain-containing protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37555.73 Da        Isoelectric Point: 5.8532

>NTDB_id=463140 HW369_RS19160 WP_195694786.1 3641693..3642724(+) (recA) [Priestia megaterium strain BHS1]
MNDKKAALDMALKQIEKQFGTGSIIKMGEGTHTKVEASSSGSLALDIALGINGYPKGRIMEVYGPESSGKTTVSLHAIAE
VQKNGGRAAFIDAEHALDPVYARKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPQKEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGNDIVGNKT
RIKVVKNKMAPPFRIAEVDIMYGEGISKEGEILDIGSEVDIVQKSGSWFSYNEERLGQGRENAKIFLKENPEIREEIRKR
IIDFKYSDNVNNNNNNDSEKENQ

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=463140 HW369_RS19160 WP_195694786.1 3641693..3642724(+) (recA) [Priestia megaterium strain BHS1]
ATGAATGATAAAAAAGCAGCACTAGATATGGCTCTAAAACAAATTGAAAAACAATTCGGTACAGGATCAATTATTAAAAT
GGGAGAAGGCACACATACAAAAGTTGAGGCATCTAGCTCAGGCTCATTAGCTTTAGATATAGCTCTTGGAATTAATGGTT
ATCCCAAAGGGAGAATTATGGAAGTTTACGGGCCGGAAAGTTCAGGTAAAACAACCGTTTCCTTACACGCAATTGCAGAA
GTACAAAAAAATGGAGGTCGAGCTGCCTTTATTGATGCTGAACACGCACTTGATCCAGTTTATGCAAGAAAACTAGGTGT
AGATATTGATGAGTTACTGTTATCTCAACCAGATACTGGTGAACAGGCACTTGAAATTGCTGAAGCATTAGTTAGAAGTG
GTGCTGTAGATATTATTGTTGTTGACTCAGTAGCAGCATTAGTTCCGCAAAAAGAAATTGAAGGAGAAATGGGAGATTCT
CACGTAGGTTTACAAGCTCGTTTGATGTCTCAAGCTCTTCGTAAACTATCTGGAGCAATCAATAAGTCTAAAACCATTGC
CATCTTCATCAACCAAATCAGGGAGAAAGTAGGCGTTATGTTTGGAAATCCAGAAACAACGCCAGGTGGAAGAGCACTAA
AATTCTATTCTTCCGTTCGTCTTGAGGTTCGCCGCGCTGAACAACTTAAACTAGGAAATGACATAGTTGGTAATAAAACA
AGAATTAAAGTAGTCAAAAATAAAATGGCACCTCCTTTCCGCATTGCTGAAGTAGATATTATGTATGGAGAAGGTATCTC
AAAAGAAGGAGAAATCTTAGATATCGGTTCTGAAGTAGACATTGTTCAAAAGTCTGGATCTTGGTTTTCATATAATGAGG
AGCGTTTAGGACAAGGACGAGAAAACGCTAAGATTTTCTTAAAAGAAAACCCTGAAATTAGAGAAGAAATTAGAAAAAGA
ATTATTGATTTCAAATATAGTGATAATGTTAATAACAATAACAATAACGATAGCGAAAAAGAAAACCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.979

95.918

0.796
  recA Latilactobacillus sakei subsp. sakei 23K

72.812

93.294

0.679
  recA Streptococcus pneumoniae D39

64.957

100

0.665
  recA Streptococcus pneumoniae Rx1

64.957

100

0.665
  recA Streptococcus pneumoniae R6

64.957

100

0.665
  recA Streptococcus pneumoniae TIGR4

64.957

100

0.665
  recA Streptococcus mitis NCTC 12261

68.731

94.169

0.647
  recA Streptococcus mitis SK321

68.421

94.169

0.644
  recA Streptococcus mutans UA159

67.593

94.461

0.638
  recA Streptococcus pyogenes NZ131

67.593

94.461

0.638
  recA Acinetobacter baylyi ADP1

61.272

100

0.618
  recA Lactococcus lactis subsp. cremoris KW2

66.458

93.003

0.618
  recA Neisseria gonorrhoeae strain FA1090

65.732

93.586

0.615
  recA Neisseria gonorrhoeae MS11

65.732

93.586

0.615
  recA Neisseria gonorrhoeae MS11

65.732

93.586

0.615
  recA Acinetobacter baumannii D1279779

64.577

93.003

0.601
  recA Vibrio cholerae strain A1552

63.95

93.003

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.95

93.003

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.24

93.586

0.592
  recA Helicobacter pylori strain NCTC11637

63.125

93.294

0.589
  recA Glaesserella parasuis strain SC1401

63.522

92.711

0.589
  recA Helicobacter pylori 26695

62.813

93.294

0.586
  recA Pseudomonas stutzeri DSM 10701

63.009

93.003

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.656

95.044

0.586
  recA Ralstonia pseudosolanacearum GMI1000

65.147

89.504

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.19

93.586

0.554