Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HVY04_RS16905 Genome accession   NZ_CP057509
Coordinates   3564451..3565515 (-) Length   354 a.a.
NCBI ID   WP_115257638.1    Uniprot ID   -
Organism   Citrobacter freundii strain RHB24-C03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3559451..3570515
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HVY04_RS16890 (HVY04_16895) csrA 3560702..3560887 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  HVY04_RS16895 (HVY04_16900) alaS 3561126..3563753 (-) 2628 WP_181624633.1 alanine--tRNA ligase -
  HVY04_RS16900 (HVY04_16905) recX 3563882..3564382 (-) 501 WP_181218027.1 recombination regulator RecX -
  HVY04_RS16905 (HVY04_16910) recA 3564451..3565515 (-) 1065 WP_115257638.1 recombinase RecA Machinery gene
  HVY04_RS16910 (HVY04_16915) pncC 3565608..3566105 (-) 498 WP_096755986.1 nicotinamide-nucleotide amidase -
  HVY04_RS16915 (HVY04_16920) mltB 3566298..3567377 (-) 1080 WP_096755985.1 lytic murein transglycosylase B -
  HVY04_RS16920 (HVY04_16925) srlA 3567640..3568203 (+) 564 WP_096755984.1 PTS glucitol/sorbitol transporter subunit IIC -
  HVY04_RS16925 (HVY04_16930) - 3568200..3569171 (+) 972 WP_117343188.1 PTS glucitol/sorbitol transporter subunit IIB -
  HVY04_RS16930 (HVY04_16935) srlB 3569185..3569547 (+) 363 WP_096755982.1 PTS glucitol/sorbitol transporter subunit IIA -
  HVY04_RS16935 (HVY04_16940) srlD 3569565..3570344 (+) 780 WP_115257636.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38190.56 Da        Isoelectric Point: 4.8894

>NTDB_id=461897 HVY04_RS16905 WP_115257638.1 3564451..3565515(-) (recA) [Citrobacter freundii strain RHB24-C03]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGDNVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYNGEKIGQGKANATNWLKENPTTAKEI
EKKVRELLLNNQDSKPDFSVDDSSEGVKETNEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=461897 HVY04_RS16905 WP_115257638.1 3564451..3565515(-) (recA) [Citrobacter freundii strain RHB24-C03]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCGCTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTGGATATCGCATTGGGTG
CAGGCGGTTTGCCGATGGGGCGTATCGTCGAAATCTACGGGCCAGAATCCTCCGGTAAAACAACCCTGACGCTGCAGGTG
ATTGCTGCCGCACAGCGTGAAGGTAAAACCTGTGCGTTCATCGATGCAGAACACGCGCTTGACCCTGTTTATGCCCGTAA
GCTTGGTGTTGATATCGACAACCTGCTGTGCTCTCAGCCAGATACCGGTGAACAAGCGCTGGAAATCTGTGACGCACTGG
CGCGTTCCGGTGCCGTAGACGTTATCGTTGTTGACTCCGTTGCCGCGCTGACGCCGAAGGCGGAAATCGAAGGCGAGATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCAATGCGTAAACTGGCGGGTAACCTGAAACAGTCCAA
TACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGCGTCATGTTCGGTAACCCGGAAACCACGACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTTCGTCTGGACATCCGTCGTATTGGCGCGGTGAAAGAGGGCGATAACGTAGTCGGT
AGTGAAACCCGCGTTAAGGTTGTGAAAAACAAAATTGCTGCGCCGTTTAAACAGGCCGAATTCCAGATCCTTTACGGTGA
AGGCATCAACTTCTACGGTGAACTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCCGGCGCATGGTACAGCT
ACAACGGTGAAAAAATTGGTCAGGGTAAAGCGAACGCAACCAACTGGCTGAAAGAAAACCCGACTACCGCAAAAGAAATT
GAGAAAAAAGTTCGCGAGTTACTGCTCAATAACCAGGATTCAAAACCGGACTTCTCCGTTGATGACAGCAGTGAAGGCGT
AAAAGAAACGAACGAAGATTTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.592

93.503

0.791
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

93.503

0.791
  recA Pseudomonas stutzeri DSM 10701

73.021

96.328

0.703
  recA Acinetobacter baumannii D1279779

74.924

92.373

0.692
  recA Acinetobacter baylyi ADP1

74.618

92.373

0.689
  recA Glaesserella parasuis strain SC1401

70.088

96.328

0.675
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae MS11

69.325

92.09

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.09

0.638
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Latilactobacillus sakei subsp. sakei 23K

58.31

100

0.585
  recA Helicobacter pylori strain NCTC11637

61.128

95.198

0.582
  recA Helicobacter pylori 26695

60.831

95.198

0.579
  recA Lactococcus lactis subsp. cremoris KW2

63.158

91.243

0.576
  recA Streptococcus pyogenes NZ131

62.462

91.808

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Streptococcus mitis SK321

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.848

91.243

0.573
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus mutans UA159

62.154

91.808

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.928

90.678

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

91.525

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.785

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

90.678

0.554