Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWQ17_RS18555 Genome accession   NZ_CP056779
Coordinates   3881803..3882861 (+) Length   352 a.a.
NCBI ID   WP_148421347.1    Uniprot ID   -
Organism   Enterobacter pasteurii strain D41-sc-1712200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3876803..3887861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ17_RS18525 (HWQ17_18525) srlD 3877042..3877821 (-) 780 WP_148421334.1 sorbitol-6-phosphate dehydrogenase -
  HWQ17_RS18530 (HWQ17_18530) srlB 3877836..3878198 (-) 363 WP_148421336.1 PTS glucitol/sorbitol transporter subunit IIA -
  HWQ17_RS18535 (HWQ17_18535) - 3878211..3879170 (-) 960 WP_148421338.1 PTS glucitol/sorbitol transporter subunit IIB -
  HWQ17_RS18540 (HWQ17_18540) srlA 3879167..3879730 (-) 564 WP_148421340.1 PTS glucitol/sorbitol transporter subunit IIC -
  HWQ17_RS18545 (HWQ17_18545) mltB 3879983..3881083 (+) 1101 WP_176678686.1 lytic murein transglycosylase B -
  HWQ17_RS18550 (HWQ17_18550) pncC 3881216..3881713 (+) 498 WP_148421345.1 nicotinamide-nucleotide amidase -
  HWQ17_RS18555 (HWQ17_18555) recA 3881803..3882861 (+) 1059 WP_148421347.1 recombinase RecA Machinery gene
  HWQ17_RS18560 (HWQ17_18560) recX 3882930..3883430 (+) 501 WP_148421349.1 recombination regulator RecX -
  HWQ17_RS18565 (HWQ17_18565) alaS 3883562..3886213 (+) 2652 WP_148421351.1 alanine--tRNA ligase -
  HWQ17_RS18570 (HWQ17_18570) csrA 3886455..3886640 (+) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37790.21 Da        Isoelectric Point: 4.8134

>NTDB_id=460610 HWQ17_RS18555 WP_148421347.1 3881803..3882861(+) (recA) [Enterobacter pasteurii strain D41-sc-1712200]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
VAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFLGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKENPAAAKEI
EKKVRELLLNNQDSKPDFVADGADAEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=460610 HWQ17_RS18555 WP_148421347.1 3881803..3882861(+) (recA) [Enterobacter pasteurii strain D41-sc-1712200]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTGGAAACCATCTCCACCGGTTCGCTTTCTCTTGATATCGCACTGGGCG
CTGGCGGTTTGCCGATGGGCCGTATCGTAGAAATCTACGGTCCGGAATCCTCAGGTAAAACGACCCTGACGCTGCAGGTC
GTTGCGGCGGCACAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGCTGGACCCAGTCTATGCCCGTAA
GCTGGGCGTTGATATTGACAATCTGCTGTGTTCTCAGCCGGACACCGGCGAGCAGGCACTGGAAATTTGTGACGCGCTGG
CGCGCTCCGGTGCGGTTGACGTGATCATCGTCGACTCCGTTGCTGCGCTGACGCCAAAAGCGGAAATCGAAGGTGAAATC
GGTGACTCTCACATGGGCCTCGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
TACGCTGCTGATTTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACCACCGGTGGTA
ACGCACTGAAATTCTACGCCTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGCGAGAACGTGGTGGGT
AGCGAAACCCGCGTGAAGGTTGTGAAGAACAAAATCGCAGCACCGTTCAAACAGGCTGAGTTCCAGATCCTCTACGGCGA
AGGCATCAACTTCCTCGGCGAGCTGGTTGACCTGGGCGTGAAAGAGAAGCTGATTGAAAAAGCGGGCGCATGGTACAGCT
ACAACGGCGACAAGATTGGTCAGGGTAAAGCGAATGCTATCTCCTGGCTGAAAGAGAACCCGGCTGCGGCGAAAGAGATC
GAGAAGAAGGTGCGTGAGCTTCTGCTGAACAATCAGGACTCTAAACCTGATTTCGTGGCTGACGGCGCGGATGCTGAAGA
AACCAACGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.592

94.034

0.795
  recA Vibrio cholerae strain A1552

84.592

94.034

0.795
  recA Pseudomonas stutzeri DSM 10701

73.121

98.295

0.719
  recA Acinetobacter baumannii D1279779

74.618

92.898

0.693
  recA Acinetobacter baylyi ADP1

74.085

93.182

0.69
  recA Glaesserella parasuis strain SC1401

68.966

98.864

0.682
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae MS11

69.632

92.614

0.645
  recA Neisseria gonorrhoeae strain FA1090

69.632

92.614

0.645
  recA Ralstonia pseudosolanacearum GMI1000

70.74

88.352

0.625
  recA Helicobacter pylori strain NCTC11637

61.128

95.739

0.585
  recA Helicobacter pylori 26695

60.831

95.739

0.582
  recA Streptococcus pneumoniae D39

62.848

91.761

0.577
  recA Streptococcus pneumoniae TIGR4

62.848

91.761

0.577
  recA Streptococcus pneumoniae R6

62.848

91.761

0.577
  recA Streptococcus pneumoniae Rx1

62.848

91.761

0.577
  recA Streptococcus mitis NCTC 12261

62.229

91.761

0.571
  recA Streptococcus mitis SK321

62.229

91.761

0.571
  recA Streptococcus pyogenes NZ131

61.846

92.33

0.571
  recA Lactococcus lactis subsp. cremoris KW2

61.92

91.761

0.568
  recA Streptococcus mutans UA159

61.538

92.33

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.42

92.045

0.565
  recA Bacillus subtilis subsp. subtilis str. 168

61.994

91.193

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

60.923

92.33

0.562
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.459

94.602

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.193

0.56