Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JL476_RS05610 Genome accession   NZ_CP068586
Coordinates   1071927..1072475 (+) Length   182 a.a.
NCBI ID   WP_052780253.1    Uniprot ID   -
Organism   Campylobacter coli strain CC19CH076     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1066927..1077475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL476_RS05585 (JL476_05590) rseP 1067041..1068144 (+) 1104 WP_060794051.1 RIP metalloprotease RseP -
  JL476_RS05590 (JL476_05595) - 1068141..1068997 (+) 857 Protein_1085 VirK family antimicrobial peptide resistance protein -
  JL476_RS05595 (JL476_05600) - 1068990..1069991 (-) 1002 WP_057030590.1 sugar phosphate isomerase/epimerase -
  JL476_RS05600 (JL476_05605) - 1069991..1071262 (-) 1272 WP_057030591.1 MFS transporter -
  JL476_RS05605 (JL476_05610) rpsF 1071541..1071918 (+) 378 WP_002777082.1 30S ribosomal protein S6 -
  JL476_RS05610 (JL476_05615) ssb 1071927..1072475 (+) 549 WP_052780253.1 single-stranded DNA-binding protein Machinery gene
  JL476_RS05615 (JL476_05620) rpsR 1072486..1072746 (+) 261 WP_002777087.1 30S ribosomal protein S18 -
  JL476_RS05620 (JL476_05625) lon 1072802..1075177 (-) 2376 WP_170876373.1 endopeptidase La -
  JL476_RS05625 (JL476_05630) - 1075193..1075840 (-) 648 WP_002780248.1 outer membrane protein assembly factor BamD -
  JL476_RS05630 (JL476_05635) fliW 1076005..1076394 (+) 390 WP_002777093.1 flagellar assembly protein FliW -
  JL476_RS05635 (JL476_05640) proC 1076394..1077131 (+) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  JL476_RS05640 (JL476_05645) ctsT 1077128..1077433 (+) 306 WP_002790525.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20747.64 Da        Isoelectric Point: 4.8501

>NTDB_id=459916 JL476_RS05610 WP_052780253.1 1071927..1072475(+) (ssb) [Campylobacter coli strain CC19CH076]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQTYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=459916 JL476_RS05610 WP_052780253.1 1071927..1072475(+) (ssb) [Campylobacter coli strain CC19CH076]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
CTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379