Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HV346_RS17420 Genome accession   NZ_CP056199
Coordinates   3647688..3648746 (-) Length   352 a.a.
NCBI ID   WP_181620503.1    Uniprot ID   A0A7L6CNA5
Organism   Enterobacter sp. RHBSTW-00994     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3642688..3653746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV346_RS17405 (HV346_17410) csrA 3643932..3644117 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  HV346_RS17410 (HV346_17415) alaS 3644359..3646986 (-) 2628 WP_181620501.1 alanine--tRNA ligase -
  HV346_RS17415 (HV346_17420) recX 3647119..3647619 (-) 501 WP_181620502.1 recombination regulator RecX -
  HV346_RS17420 (HV346_17425) recA 3647688..3648746 (-) 1059 WP_181620503.1 recombinase RecA Machinery gene
  HV346_RS17425 (HV346_17430) pncC 3648839..3649336 (-) 498 WP_181620504.1 nicotinamide-nucleotide amidase -
  HV346_RS17430 (HV346_17435) - 3649467..3650345 (-) 879 WP_181620505.1 metal ABC transporter substrate-binding protein -
  HV346_RS17435 (HV346_17440) - 3650360..3651220 (-) 861 WP_181620506.1 metal ABC transporter permease -
  HV346_RS17440 (HV346_17445) - 3651217..3651870 (-) 654 WP_181620507.1 ATP-binding cassette domain-containing protein -
  HV346_RS17445 (HV346_17450) mltB 3652113..3653213 (-) 1101 WP_181620508.1 lytic murein transglycosylase B -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37838.26 Da        Isoelectric Point: 4.8095

>NTDB_id=458650 HV346_RS17420 WP_181620503.1 3647688..3648746(-) (recA) [Enterobacter sp. RHBSTW-00994]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPVYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFFGELVDLGVKEKLIEKAGAWYSYNGDKIGQGKANAISWLKDNPAAAKEI
EKKVRELLLNNQDSKPDFAVDGADVEETNEDF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=458650 HV346_RS17420 WP_181620503.1 3647688..3648746(-) (recA) [Enterobacter sp. RHBSTW-00994]
ATGGCTATCGACGAGAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATCGAAAAGCAATTCGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGACGTAGAGACAATCTCCACCGGTTCGCTTTCACTGGATATCGCACTGGGCG
CAGGTGGTTTGCCAATGGGCCGTATCGTAGAAATCTACGGACCGGAATCCTCAGGTAAAACCACGCTGACGCTACAGGTT
ATCGCTGCTGCACAGCGTGAAGGCAAAACCTGTGCCTTTATCGATGCTGAACACGCACTTGATCCTGTTTATGCTCGTAA
ATTGGGTGTCGATATCGACAATCTGCTGTGCTCTCAGCCAGACACCGGTGAGCAAGCACTGGAAATTTGTGACGCACTGG
CGCGCTCCGGTGCTGTTGATGTCATCGTGGTTGACTCCGTTGCCGCACTGACACCAAAAGCGGAAATCGAAGGCGAAATC
GGTGACTCTCATATGGGCCTTGCGGCACGAATGATGAGCCAGGCGATGCGTAAGCTGGCCGGTAACCTGAAACAGTCCAA
CACGCTGCTGATTTTCATCAACCAGATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCGGAAACGACTACCGGTGGTA
ACGCGCTGAAATTCTACGCTTCTGTCCGTCTGGATATCCGCCGTATCGGTGCGGTGAAAGAGGGTGAGAACGTTGTCGGT
AGCGAAACTCGCGTGAAGGTTGTGAAGAATAAAATTGCGGCCCCGTTCAAACAGGCTGAATTCCAGATCCTCTACGGTGA
AGGTATCAACTTCTTCGGCGAGCTGGTTGATCTGGGTGTCAAAGAGAAGCTGATCGAGAAAGCTGGCGCATGGTATAGCT
ACAACGGTGATAAGATTGGTCAGGGTAAAGCAAATGCTATCTCCTGGCTTAAAGATAACCCGGCTGCTGCGAAAGAGATT
GAAAAGAAAGTGCGTGAACTTCTGCTGAACAACCAGGATTCCAAACCCGATTTCGCGGTTGATGGCGCTGATGTTGAAGA
AACCAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L6CNA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

84.894

94.034

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

84.894

94.034

0.798
  recA Pseudomonas stutzeri DSM 10701

73.653

94.886

0.699
  recA Acinetobacter baumannii D1279779

74.618

92.898

0.693
  recA Acinetobacter baylyi ADP1

74.085

93.182

0.69
  recA Glaesserella parasuis strain SC1401

68.661

99.716

0.685
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae MS11

69.325

92.614

0.642
  recA Neisseria gonorrhoeae strain FA1090

69.325

92.614

0.642
  recA Ralstonia pseudosolanacearum GMI1000

70.418

88.352

0.622
  recA Helicobacter pylori strain NCTC11637

61.424

95.739

0.588
  recA Helicobacter pylori 26695

61.128

95.739

0.585
  recA Streptococcus pneumoniae TIGR4

62.539

91.761

0.574
  recA Streptococcus mitis SK321

62.539

91.761

0.574
  recA Streptococcus mitis NCTC 12261

62.539

91.761

0.574
  recA Streptococcus pneumoniae Rx1

62.539

91.761

0.574
  recA Streptococcus pneumoniae D39

62.539

91.761

0.574
  recA Streptococcus pneumoniae R6

62.539

91.761

0.574
  recA Streptococcus pyogenes NZ131

62.154

92.33

0.574
  recA Streptococcus mutans UA159

61.846

92.33

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.602

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

91.193

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.728

92.045

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.231

92.33

0.565
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.761

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

91.193

0.554