Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWV00_RS02485 Genome accession   NZ_CP056123
Coordinates   540325..541383 (+) Length   352 a.a.
NCBI ID   WP_211684553.1    Uniprot ID   -
Organism   Moritella sp. 24     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 535325..546383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV00_RS02470 (HWV00_02470) rpoS 535744..536703 (+) 960 WP_211684550.1 RNA polymerase sigma factor RpoS -
  HWV00_RS02475 (HWV00_02475) - 536875..537558 (+) 684 WP_211684551.1 RNA polymerase subunit sigma -
  HWV00_RS02480 (HWV00_02480) mutS 537579..540146 (-) 2568 WP_211684552.1 DNA mismatch repair protein MutS -
  HWV00_RS02485 (HWV00_02485) recA 540325..541383 (+) 1059 WP_211684553.1 recombinase RecA Machinery gene
  HWV00_RS02490 (HWV00_02490) - 541511..542119 (-) 609 WP_211684554.1 PepSY domain-containing protein -
  HWV00_RS02495 (HWV00_02495) - 542245..543423 (-) 1179 WP_211684555.1 conjugal transfer protein TraF -
  HWV00_RS02500 (HWV00_02500) traF 543671..544975 (-) 1305 WP_211686288.1 conjugal transfer protein TraF -
  HWV00_RS21390 - 545335..545460 (+) 126 WP_255554879.1 hypothetical protein -
  HWV00_RS02505 (HWV00_02505) - 545536..546120 (+) 585 WP_211684556.1 YjaG family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37789.36 Da        Isoelectric Point: 5.0467

>NTDB_id=458284 HWV00_RS02485 WP_211684553.1 540325..541383(+) (recA) [Moritella sp. 24]
MPQGNKMDANKEKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL
TLEVIASAQREGKICAFIDAEHALDPIYAGKLGVDINELLVSQPDTGEQALEICDMLARSGAVDIIVVDSVAALTPKAEI
EGDMGDSHMGLQARMLSQAMRKLTGNLKQTNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGD
EITGNETRVKVVKNKIAAPFRQAEFQILYGKGFNRNGELIDLGVKEKLIEKAGAWYSYKGDKIGQGKAKSTQFLIDNPAI
ATEIDGLIRANLLGNKDEEVVAVATTEAENEF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=458284 HWV00_RS02485 WP_211684553.1 540325..541383(+) (recA) [Moritella sp. 24]
ATGCCTCAGGGGAATAAAATGGACGCGAATAAAGAAAAAGCCTTAGCTGCAGCACTTGGACAAATTGAAAAACAATTTGG
TAAAGGTTCTATCATGAAGCTGGGTGACAACCGTACCATGGACGTAGAAACAGTTTCTACTGGTTCACTTTCTCTTGATA
TCGCGTTGGGTGCTGGTGGCTTACCAATGGGTCGTATCGTAGAAATCTATGGTCCTGAATCAAGTGGTAAAACAACGTTA
ACACTAGAAGTTATCGCGTCAGCACAACGTGAAGGTAAAATCTGTGCGTTTATTGATGCTGAGCATGCTCTAGACCCTAT
CTACGCAGGTAAATTAGGCGTCGATATTAATGAGTTATTAGTATCGCAACCGGATACAGGTGAGCAAGCGCTAGAAATTT
GTGACATGCTAGCACGCTCAGGTGCTGTTGATATTATCGTAGTCGATTCTGTTGCTGCACTAACACCGAAAGCTGAAATT
GAAGGCGACATGGGCGACAGCCACATGGGTCTACAAGCACGTATGTTATCGCAAGCAATGCGTAAACTTACTGGTAACTT
AAAGCAAACGAACACTATGTGTATCTTCATTAACCAAATCCGTATGAAGATTGGTGTAATGTTTGGTTCACCTGAAACGA
CTACGGGCGGTAACGCACTTAAATTCTACGCGTCAGTTCGTTTAGATATCCGTCGTATTGGTTCAGTAAAAGATGGCGAC
GAGATCACGGGTAATGAAACACGTGTGAAAGTTGTTAAAAACAAAATTGCAGCACCATTCAGACAAGCTGAATTCCAAAT
CCTATACGGTAAAGGCTTTAACCGTAACGGTGAGTTAATCGATTTAGGTGTTAAAGAAAAACTAATTGAAAAAGCAGGCG
CTTGGTACTCATACAAGGGTGATAAGATCGGTCAAGGTAAAGCGAAATCAACACAATTCCTTATCGATAACCCTGCTATT
GCTACAGAAATTGACGGTCTTATCCGTGCTAATTTACTTGGCAATAAAGATGAAGAAGTGGTTGCTGTTGCGACAACTGA
AGCTGAAAACGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.539

98.58

0.784
  recA Vibrio cholerae strain A1552

79.539

98.58

0.784
  recA Acinetobacter baylyi ADP1

72.254

98.295

0.71
  recA Pseudomonas stutzeri DSM 10701

75.229

92.898

0.699
  recA Acinetobacter baumannii D1279779

74.006

92.898

0.687
  recA Glaesserella parasuis strain SC1401

69.851

95.17

0.665
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae strain FA1090

70.769

92.33

0.653
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

92.898

0.591
  recA Streptococcus pneumoniae Rx1

59.538

98.295

0.585
  recA Streptococcus pneumoniae TIGR4

59.538

98.295

0.585
  recA Streptococcus pneumoniae R6

59.538

98.295

0.585
  recA Streptococcus pneumoniae D39

59.538

98.295

0.585
  recA Streptococcus mitis NCTC 12261

60.725

94.034

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

93.466

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

91.761

0.568
  recA Streptococcus mitis SK321

60.423

94.034

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.898

0.568
  recA Helicobacter pylori 26695

59.94

94.318

0.565
  recA Helicobacter pylori strain NCTC11637

59.639

94.318

0.563
  recA Lactococcus lactis subsp. cremoris KW2

59.819

94.034

0.563
  recA Streptococcus mutans UA159

60.061

93.182

0.56
  recA Streptococcus pyogenes NZ131

59.215

94.034

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

58.438

90.909

0.531