Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   JJN14_RS09345 Genome accession   NZ_CP067992
Coordinates   1895261..1895854 (-) Length   197 a.a.
NCBI ID   WP_084862868.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1890261..1900854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS09320 (JJN14_09320) - 1890961..1891638 (+) 678 WP_000078014.1 DUF1129 domain-containing protein -
  JJN14_RS09325 (JJN14_09325) - 1891777..1893033 (+) 1257 WP_201058285.1 ISL3 family transposase -
  JJN14_RS09330 (JJN14_09330) - 1893200..1894234 (+) 1035 WP_201058505.1 S66 family peptidase -
  JJN14_RS09335 (JJN14_09335) - 1894340..1894603 (+) 264 WP_000166114.1 SemiSWEET family transporter -
  JJN14_RS09340 (JJN14_09340) - 1894688..1895251 (-) 564 WP_201058506.1 DNA-3-methyladenine glycosylase I -
  JJN14_RS09345 (JJN14_09345) ruvA 1895261..1895854 (-) 594 WP_084862868.1 Holliday junction branch migration protein RuvA Machinery gene
  JJN14_RS09350 (JJN14_09350) hexB 1895983..1897932 (-) 1950 WP_201058507.1 DNA mismatch repair endonuclease MutL Machinery gene
  JJN14_RS09355 (JJN14_09355) - 1898137..1898577 (+) 441 WP_201058508.1 LytTR family DNA-binding domain-containing protein -
  JJN14_RS09360 (JJN14_09360) - 1898574..1899032 (+) 459 WP_201058509.1 DUF3021 domain-containing protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21653.15 Da        Isoelectric Point: 5.8407

>NTDB_id=458271 JJN14_RS09345 WP_084862868.1 1895261..1895854(-) (ruvA) [Streptococcus mitis strain S022-V7-A3]
MYEYLKGIITKITAKYIVLEVNGIGYILHVANPYAYSGQVNQEAQIYVHQVVREDAQLLYGFRSEDEKKLFLSLISVSGI
GPVSALAIIAADDNAGLVQAIETKNITYLTKFPKIGKKTAQQMVLDLEGKVVVAGDDLPAKVAVQASAENQELEEAMEAM
LALGYKATELKKIKKFFEGTTDTAENYIKSALKMLVK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=458271 JJN14_RS09345 WP_084862868.1 1895261..1895854(-) (ruvA) [Streptococcus mitis strain S022-V7-A3]
ATGTACGAATATTTAAAAGGAATCATTACTAAAATCACTGCTAAATACATTGTTCTTGAAGTCAACGGTATCGGTTATAT
CCTGCATGTGGCCAATCCCTATGCCTACTCAGGACAAGTCAACCAAGAAGCTCAGATTTATGTGCATCAGGTCGTGCGTG
AGGATGCTCAGCTGCTTTATGGATTTCGCTCAGAAGATGAGAAGAAGCTCTTTCTCAGTCTGATTTCGGTCTCTGGGATT
GGTCCGGTGTCAGCTCTTGCTATTATCGCTGCCGATGACAATGCTGGTTTGGTTCAAGCCATCGAAACCAAGAACATCAC
CTACTTGACCAAGTTCCCTAAAATTGGCAAGAAAACAGCCCAGCAGATGGTGCTGGACTTGGAAGGCAAGGTAGTAGTTG
CTGGAGATGACCTTCCTGCTAAGGTGGCAGTGCAAGCTAGCGCTGAAAACCAAGAATTGGAAGAAGCTATGGAAGCCATG
TTGGCACTGGGCTACAAGGCAACTGAGCTTAAGAAAATCAAGAAATTCTTTGAAGGAACGACAGATACAGCTGAGAACTA
TATCAAGTCAGCCCTTAAAATGTTAGTCAAATAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

98.477

100

0.985
  ruvA Streptococcus pneumoniae R6

97.97

100

0.98
  ruvA Streptococcus pneumoniae D39

97.97

100

0.98
  ruvA Bacillus subtilis subsp. subtilis str. 168

40.291

100

0.421