Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWV01_RS19895 Genome accession   NZ_CP056122
Coordinates   4457841..4458905 (-) Length   354 a.a.
NCBI ID   WP_211673164.1    Uniprot ID   -
Organism   Moritella sp. 5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4452841..4463905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV01_RS19875 (HWV01_19850) - 4453928..4454212 (-) 285 WP_017221893.1 HU family DNA-binding protein -
  HWV01_RS19880 (HWV01_19855) - 4454467..4455051 (-) 585 WP_211673161.1 YjaG family protein -
  HWV01_RS19885 (HWV01_19860) traF 4455604..4456908 (+) 1305 WP_211673162.1 conjugal transfer protein TraF -
  HWV01_RS19890 (HWV01_19865) - 4457122..4457730 (+) 609 WP_211673163.1 PepSY domain-containing protein -
  HWV01_RS19895 (HWV01_19870) recA 4457841..4458905 (-) 1065 WP_211673164.1 recombinase RecA Machinery gene
  HWV01_RS19900 (HWV01_19875) mutS 4459084..4461654 (+) 2571 WP_211673165.1 DNA mismatch repair protein MutS -
  HWV01_RS19905 (HWV01_19880) - 4461664..4462344 (-) 681 WP_211673166.1 RNA polymerase subunit sigma -
  HWV01_RS19910 (HWV01_19885) rpoS 4462515..4463474 (-) 960 WP_211673167.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38059.75 Da        Isoelectric Point: 5.3565

>NTDB_id=458271 HWV01_RS19895 WP_211673164.1 4457841..4458905(-) (recA) [Moritella sp. 5]
MPQGNKMDANKEKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL
TLEVIASAQREGKICAFIDAEHALDPIYAGKLGVDINELLVSQPDTGEQALEICDMLARSGAVDIIVVDSVAALTPKAEI
EGDMGDSHMGLQARMLSQAMRKLTGNLKTTNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGD
EITGNETRVKVVKNKIAAPFRQAEFQILYGKGFNRNGELIDLGVKEKLIEKAGAWYSYKGDKIGQGKAKSTQFLIDNPKI
AAEIDGMIRANLLGNKDEVEVEAKAKAPEAENEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=458271 HWV01_RS19895 WP_211673164.1 4457841..4458905(-) (recA) [Moritella sp. 5]
ATGCCTCAGGGGAATAAAATGGACGCGAATAAAGAAAAAGCCTTAGCTGCAGCACTTGGACAAATTGAAAAACAATTTGG
TAAAGGTTCTATCATGAAGCTAGGTGATAACCGTACCATGGACGTAGAAACTGTTTCTACAGGTTCACTTTCTCTTGATA
TTGCGTTGGGAGCTGGTGGTTTACCGATGGGGCGTATCGTAGAGATTTACGGTCCTGAATCAAGTGGTAAAACGACGTTA
ACGCTAGAAGTTATCGCGTCAGCACAACGAGAAGGTAAAATCTGTGCCTTTATTGATGCAGAGCATGCACTTGACCCTAT
TTATGCAGGTAAACTTGGCGTTGATATTAATGAACTATTAGTCTCTCAACCAGATACTGGTGAGCAAGCATTAGAAATAT
GTGACATGCTCGCACGTTCTGGCGCTGTTGATATTATCGTAGTCGATTCTGTAGCAGCACTAACTCCGAAAGCTGAAATT
GAAGGCGATATGGGCGATAGCCACATGGGTCTGCAGGCACGTATGTTATCGCAAGCGATGCGTAAATTAACGGGTAATTT
AAAAACGACTAACACCATGTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTTCACCTGAAACGA
CTACAGGCGGTAATGCACTTAAATTCTACGCGTCAGTACGTTTAGATATCCGTCGTATTGGTTCAGTAAAAGATGGCGAC
GAGATCACGGGTAATGAAACACGTGTTAAAGTTGTGAAAAATAAAATTGCAGCACCATTTAGACAAGCTGAATTCCAAAT
ATTATACGGTAAAGGCTTTAACCGTAATGGTGAGTTAATTGATCTAGGTGTTAAAGAAAAGCTAATCGAAAAAGCAGGCG
CTTGGTATTCATACAAGGGTGATAAGATTGGTCAAGGTAAAGCTAAATCAACACAATTCCTTATTGACAACCCAAAGATT
GCAGCTGAAATTGACGGTATGATCCGTGCTAATCTACTTGGTAATAAAGATGAAGTTGAAGTTGAAGCTAAGGCTAAGGC
TCCTGAAGCTGAAAACGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.023

98.305

0.777
  recA Vibrio cholerae strain A1552

79.023

98.305

0.777
  recA Pseudomonas stutzeri DSM 10701

75.229

92.373

0.695
  recA Acinetobacter baylyi ADP1

74.924

92.373

0.692
  recA Acinetobacter baumannii D1279779

72.485

95.48

0.692
  recA Glaesserella parasuis strain SC1401

69.096

96.893

0.669
  recA Neisseria gonorrhoeae MS11

70.769

91.808

0.65
  recA Neisseria gonorrhoeae MS11

70.769

91.808

0.65
  recA Neisseria gonorrhoeae strain FA1090

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

71.061

87.853

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

92.373

0.588
  recA Streptococcus mutans UA159

57.67

99.435

0.573
  recA Streptococcus mitis SK321

60.725

93.503

0.568
  recA Streptococcus mitis NCTC 12261

60.725

93.503

0.568
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

92.938

0.568
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

91.243

0.565
  recA Streptococcus pneumoniae R6

60.423

93.503

0.565
  recA Streptococcus pneumoniae Rx1

60.423

93.503

0.565
  recA Streptococcus pneumoniae D39

60.423

93.503

0.565
  recA Streptococcus pneumoniae TIGR4

60.423

93.503

0.565
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.373

0.565
  recA Helicobacter pylori 26695

59.639

93.785

0.559
  recA Lactococcus lactis subsp. cremoris KW2

59.819

93.503

0.559
  recA Helicobacter pylori strain NCTC11637

59.337

93.785

0.556
  recA Streptococcus pyogenes NZ131

59.215

93.503

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

58.438

90.395

0.528