Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   JJN14_RS07585 Genome accession   NZ_CP067992
Coordinates   1509128..1509916 (-) Length   262 a.a.
NCBI ID   WP_000940738.1    Uniprot ID   A0A2I1UDY5
Organism   Streptococcus mitis strain S022-V7-A3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1504128..1514916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS07560 (JJN14_07560) vex3 1504773..1506152 (-) 1380 WP_049492343.1 ABC transporter permease subunit Vex3 -
  JJN14_RS07565 (JJN14_07565) vex2 1506314..1506961 (-) 648 WP_201058319.1 ABC transporter ATP-binding subunit Vex2 -
  JJN14_RS07570 (JJN14_07570) - 1506974..1508251 (-) 1278 WP_201058320.1 ABC transporter permease -
  JJN14_RS07580 (JJN14_07580) - 1508553..1509128 (-) 576 WP_201058321.1 cysteine hydrolase family protein -
  JJN14_RS07585 (JJN14_07585) codY 1509128..1509916 (-) 789 WP_000940738.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  JJN14_RS07595 (JJN14_07595) - 1511610..1513184 (-) 1575 WP_084863035.1 DEAD/DEAH box helicase -
  JJN14_RS07600 (JJN14_07600) - 1513514..1514830 (+) 1317 WP_049510658.1 FAD-containing oxidoreductase -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29676.00 Da        Isoelectric Point: 5.2441

>NTDB_id=458247 JJN14_RS07585 WP_000940738.1 1509128..1509916(-) (codY) [Streptococcus mitis strain S022-V7-A3]
MAHLLEKTRKITSILKRSEEQLQEELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYI
QGANMIYDTEANLTVDHDLSIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILGELNGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLISDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=458247 JJN14_RS07585 WP_000940738.1 1509128..1509916(-) (codY) [Streptococcus mitis strain S022-V7-A3]
ATGGCACATTTATTAGAAAAAACTAGAAAAATTACTTCTATCCTGAAGCGCTCAGAGGAGCAGTTGCAGGAAGAGCTTCC
CTACAATGCAATTACCCGTCAATTGGCAGATATTATTGACTGTAACGCCTGTATCGTTAATAGCAAGGGACGTCTCCTTG
GCTATTTTATGCGTTACAAAACCAATACAGATCGTGTAGAGCAATTCTTCCAAACTAAGATTTTCCCGGATGACTACATT
CAAGGCGCGAACATGATCTACGATACAGAAGCCAATCTGACAGTTGATCATGATTTGAGTATTTTCCCTGTAGAGAGTCG
TGCCGACTTTCCAGATGGTTTGACAACGATTGCACCGATTCATGTATCAGGGATTCGTCTTGGTTCTTTGATTATTTGGC
GCAATGATAAAAAATTCGAAGATGAGGACTTGATCCTTGTTGAGATTGCGAGTACCGTTGTTGGAATTCAACTCCTCAAC
TTCCAGCGTGAAGAAGATGAGAAAAATATTCGCCGCCGTACTGCTGTTACCATGGCGGTTAATACCCTTTCTTATTCAGA
ACTCCGTGCTGTTTCAGCAATTTTAGGGGAATTAAATGGAAATGAAGGGCAGTTGACTGCGTCTGTGATTGCAGACCGTA
TCGGTATTACCCGTTCTGTGATTGTCAATGCTCTTCGTAAACTTGAGTCTGCGGGAATTATTGAAAGTCGCTCACTTGGA
ATGAAGGGAACCTACCTTAAGGTCTTGATTTCAGATATTTTTGAAGAAGTGAAGAAAAGAGATTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I1UDY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.595

100

0.626
  codY Bacillus subtilis subsp. subtilis str. 168

48.78

93.893

0.458