Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWV02_RS20225 Genome accession   NZ_CP056121
Coordinates   4547459..4548511 (-) Length   350 a.a.
NCBI ID   WP_211689236.1    Uniprot ID   -
Organism   Moritella sp. 28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4542459..4553511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV02_RS20205 (HWV02_20215) - 4543607..4543891 (-) 285 WP_017221893.1 HU family DNA-binding protein -
  HWV02_RS20210 (HWV02_20220) - 4544146..4544730 (-) 585 WP_211677579.1 YjaG family protein -
  HWV02_RS20215 (HWV02_20225) traF 4545284..4546588 (+) 1305 WP_211689235.1 conjugal transfer protein TraF -
  HWV02_RS20220 (HWV02_20230) - 4546740..4547348 (+) 609 WP_211677588.1 PepSY domain-containing protein -
  HWV02_RS20225 (HWV02_20235) recA 4547459..4548511 (-) 1053 WP_211689236.1 recombinase RecA Machinery gene
  HWV02_RS20230 (HWV02_20240) mutS 4548690..4551257 (+) 2568 WP_211677593.1 DNA mismatch repair protein MutS -
  HWV02_RS20235 (HWV02_20245) - 4551261..4551947 (-) 687 WP_211677595.1 RNA polymerase subunit sigma -
  HWV02_RS20240 (HWV02_20250) rpoS 4552118..4553077 (-) 960 WP_211677597.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37675.32 Da        Isoelectric Point: 5.1797

>NTDB_id=458247 HWV02_RS20225 WP_211689236.1 4547459..4548511(-) (recA) [Moritella sp. 28]
MPQGNKMDANKEKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL
TLEVIASAQREGKICAFIDAEHALDPIYAGKLGVDINELLVSQPDTGEQALEICDMLARSGAVDIIVVDSVAALTPKAEI
EGDMGDSHMGLQARMLSQAMRKLTGNLKTTNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGD
EITGNETRVKVVKNKIAAPFRQAEFQILYGKGFNRNGELIDLGVKEKLIEKAGAWYSYKGDKIGQGKAKSTQFLIDNPKI
AVEIDSMIRANLLGNEAEVEVKAPEAENEF

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=458247 HWV02_RS20225 WP_211689236.1 4547459..4548511(-) (recA) [Moritella sp. 28]
ATGCCTCAGGGGAATAAAATGGACGCGAATAAAGAAAAAGCCTTAGCTGCAGCACTTGGACAAATTGAAAAACAATTTGG
TAAAGGTTCTATCATGAAGCTAGGTGATAACCGTACCATGGACGTAGAAACTGTTTCTACAGGTTCACTTTCTCTTGATA
TTGCGTTGGGAGCTGGTGGTTTACCGATGGGGCGTATCGTAGAAATTTACGGTCCTGAATCAAGTGGTAAAACGACGTTA
ACGCTAGAAGTTATCGCGTCAGCACAACGAGAAGGTAAAATCTGTGCCTTTATTGATGCAGAGCATGCACTTGACCCTAT
TTATGCAGGTAAACTTGGCGTTGATATTAATGAACTATTAGTCTCTCAACCAGATACTGGTGAGCAAGCATTAGAAATAT
GTGACATGCTCGCACGTTCTGGCGCTGTTGATATTATCGTAGTCGATTCTGTAGCAGCACTAACTCCGAAAGCTGAAATT
GAAGGCGATATGGGCGATAGCCACATGGGTCTGCAGGCACGTATGTTATCGCAAGCGATGCGTAAATTAACGGGTAATTT
AAAAACGACTAACACCATGTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTTCACCTGAAACGA
CTACAGGCGGTAATGCACTTAAATTCTACGCGTCAGTACGTTTAGATATCCGTCGTATTGGTTCAGTAAAAGATGGCGAC
GAGATCACGGGTAATGAAACACGTGTTAAAGTTGTGAAGAATAAAATTGCAGCACCATTTAGACAAGCTGAATTCCAAAT
ATTATACGGTAAAGGCTTTAACCGTAATGGTGAGTTAATTGATCTAGGTGTTAAAGAAAAACTAATCGAAAAAGCAGGCG
CTTGGTATTCATACAAGGGTGATAAGATTGGTCAAGGTAAAGCTAAATCAACACAATTCCTTATTGACAACCCAAAGATT
GCAGTTGAAATTGACAGTATGATCCGTGCAAATCTACTTGGTAATGAAGCTGAAGTTGAAGTTAAGGCTCCTGAAGCTGA
AAACGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.424

94.286

0.777
  recA Vibrio cholerae strain A1552

82.424

94.286

0.777
  recA Pseudomonas stutzeri DSM 10701

73.099

97.714

0.714
  recA Acinetobacter baylyi ADP1

72.303

98

0.709
  recA Acinetobacter baumannii D1279779

71.848

97.429

0.7
  recA Glaesserella parasuis strain SC1401

70.821

94

0.666
  recA Neisseria gonorrhoeae MS11

70.769

92.857

0.657
  recA Neisseria gonorrhoeae MS11

70.769

92.857

0.657
  recA Neisseria gonorrhoeae strain FA1090

70.769

92.857

0.657
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.857

0.631
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

93.429

0.594
  recA Streptococcus mitis NCTC 12261

59.654

99.143

0.591
  recA Streptococcus mitis SK321

59.249

98.857

0.586
  recA Streptococcus mutans UA159

58.166

99.714

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

94

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

92.286

0.571
  recA Streptococcus pneumoniae D39

60.423

94.571

0.571
  recA Streptococcus pneumoniae TIGR4

60.423

94.571

0.571
  recA Streptococcus pneumoniae Rx1

60.423

94.571

0.571
  recA Streptococcus pneumoniae R6

60.423

94.571

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

93.429

0.571
  recA Helicobacter pylori 26695

60.121

94.571

0.569
  recA Helicobacter pylori strain NCTC11637

59.819

94.571

0.566
  recA Lactococcus lactis subsp. cremoris KW2

59.819

94.571

0.566
  recA Streptococcus pyogenes NZ131

59.215

94.571

0.56
  recA Latilactobacillus sakei subsp. sakei 23K

58.438

91.429

0.534