Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HWV03_RS19925 Genome accession   NZ_CP056120
Coordinates   4485447..4486505 (-) Length   352 a.a.
NCBI ID   WP_211677591.1    Uniprot ID   -
Organism   Moritella sp. 36     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4480447..4491505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWV03_RS19905 (HWV03_19895) - 4481595..4481879 (-) 285 WP_017221893.1 HU family DNA-binding protein -
  HWV03_RS19910 (HWV03_19900) - 4482134..4482718 (-) 585 WP_211677579.1 YjaG family protein -
  HWV03_RS19915 (HWV03_19905) traF 4483272..4484576 (+) 1305 WP_211677581.1 conjugal transfer protein TraF -
  HWV03_RS19920 (HWV03_19910) - 4484728..4485336 (+) 609 WP_211677588.1 PepSY domain-containing protein -
  HWV03_RS19925 (HWV03_19915) recA 4485447..4486505 (-) 1059 WP_211677591.1 recombinase RecA Machinery gene
  HWV03_RS19930 (HWV03_19920) mutS 4486684..4489251 (+) 2568 WP_211677593.1 DNA mismatch repair protein MutS -
  HWV03_RS19935 (HWV03_19925) - 4489255..4489941 (-) 687 WP_211677595.1 RNA polymerase subunit sigma -
  HWV03_RS19940 (HWV03_19930) rpoS 4490112..4491071 (-) 960 WP_211677597.1 RNA polymerase sigma factor RpoS -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37860.50 Da        Isoelectric Point: 5.1870

>NTDB_id=458223 HWV03_RS19925 WP_211677591.1 4485447..4486505(-) (recA) [Moritella sp. 36]
MPQGNKMDANKEKALAAALGQIEKQFGKGSIMKLGDNRTMDVETVSTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTL
TLEVIASAQREGKICAFIDAEHALDPIYAGKLGVDINELLVSQPDTGEQALEICDMLARSGAVDIIVVDSVAALTPKAEI
EGDMGDSHMGLQARMLSQAMRKLTGNLKTTNTMCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSVKDGD
EITGNETRVKVVKNKIAAPFRQAEFQILYGKGFNRNGELIDLGVKEKLIEKAGAWYSYKGDKIGQGKAKSTQFLIDNPKI
AAEIDGMIRANLLGNKDEAEVEVKAPEAENEF

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=458223 HWV03_RS19925 WP_211677591.1 4485447..4486505(-) (recA) [Moritella sp. 36]
ATGCCTCAGGGGAATAAAATGGACGCGAATAAAGAAAAAGCCTTAGCTGCAGCACTTGGACAAATTGAAAAACAATTTGG
TAAAGGTTCTATCATGAAGCTAGGTGATAACCGTACCATGGACGTAGAAACTGTTTCTACAGGTTCACTTTCTCTTGATA
TTGCGTTGGGAGCTGGTGGTTTACCGATGGGGCGTATCGTAGAAATTTACGGTCCTGAATCAAGTGGTAAAACGACGTTA
ACGCTAGAAGTTATCGCGTCAGCACAACGAGAAGGTAAAATCTGTGCCTTTATTGATGCAGAGCATGCACTTGACCCTAT
TTATGCAGGTAAACTTGGCGTTGATATTAATGAACTATTAGTCTCTCAACCAGATACTGGTGAGCAAGCATTAGAAATAT
GTGACATGCTCGCACGTTCTGGCGCTGTTGATATTATCGTAGTCGATTCTGTAGCAGCACTAACTCCGAAAGCTGAAATT
GAAGGCGATATGGGCGATAGCCACATGGGTCTGCAGGCACGTATGTTATCGCAAGCGATGCGTAAATTAACGGGTAATTT
AAAAACGACTAACACCATGTGTATCTTCATTAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTTCACCTGAAACGA
CTACAGGCGGTAATGCACTTAAATTCTACGCGTCAGTACGTTTAGATATCCGTCGTATTGGTTCAGTAAAAGATGGCGAC
GAGATCACGGGTAATGAAACACGTGTTAAAGTTGTGAAGAATAAAATTGCAGCACCATTTAGACAAGCTGAATTCCAAAT
ATTATACGGTAAAGGCTTTAACCGTAATGGTGAGTTAATTGATCTAGGTGTTAAAGAAAAGCTAATCGAAAAAGCAGGCG
CTTGGTATTCATACAAGGGTGATAAGATTGGTCAAGGTAAAGCTAAATCAACACAATTCCTTATTGACAACCCAAAGATT
GCAGCTGAAATTGACGGTATGATCCGTGCTAATCTACTTGGTAATAAAGATGAAGCTGAAGTTGAAGTTAAGGCTCCTGA
AGCTGAAAACGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.875

92.898

0.77
  recA Vibrio cholerae strain A1552

82.875

92.898

0.77
  recA Pseudomonas stutzeri DSM 10701

75.229

92.898

0.699
  recA Acinetobacter baylyi ADP1

74.924

92.898

0.696
  recA Acinetobacter baumannii D1279779

71.554

96.875

0.693
  recA Glaesserella parasuis strain SC1401

70.948

92.898

0.659
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae MS11

70.769

92.33

0.653
  recA Neisseria gonorrhoeae strain FA1090

70.769

92.33

0.653
  recA Ralstonia pseudosolanacearum GMI1000

71.061

88.352

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

92.898

0.591
  recA Streptococcus mutans UA159

57.55

99.716

0.574
  recA Lactococcus lactis subsp. cremoris KW2

59.064

97.159

0.574
  recA Streptococcus mitis SK321

60.725

94.034

0.571
  recA Streptococcus mitis NCTC 12261

60.725

94.034

0.571
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

93.466

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

61.92

91.761

0.568
  recA Streptococcus pneumoniae Rx1

60.423

94.034

0.568
  recA Streptococcus pneumoniae D39

60.423

94.034

0.568
  recA Streptococcus pneumoniae R6

60.423

94.034

0.568
  recA Streptococcus pneumoniae TIGR4

60.423

94.034

0.568
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.162

92.898

0.568
  recA Helicobacter pylori 26695

59.639

94.318

0.563
  recA Helicobacter pylori strain NCTC11637

59.337

94.318

0.56
  recA Streptococcus pyogenes NZ131

59.215

94.034

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

58.438

90.909

0.531