Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   JJN14_RS04890 Genome accession   NZ_CP067992
Coordinates   990973..994248 (+) Length   1091 a.a.
NCBI ID   WP_201059101.1    Uniprot ID   -
Organism   Streptococcus mitis strain S022-V7-A3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 985973..999248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JJN14_RS04865 (JJN14_04865) - 986618..987319 (+) 702 WP_201059096.1 response regulator transcription factor -
  JJN14_RS04870 (JJN14_04870) - 987316..988194 (+) 879 WP_201059097.1 sensor histidine kinase -
  JJN14_RS04875 (JJN14_04875) - 988234..988986 (-) 753 WP_201059098.1 ABC transporter permease -
  JJN14_RS04880 (JJN14_04880) - 988997..989905 (-) 909 WP_201059099.1 ATP-binding cassette domain-containing protein -
  JJN14_RS04885 (JJN14_04885) - 990047..990856 (-) 810 WP_201059100.1 Cof-type HAD-IIB family hydrolase -
  JJN14_RS04890 (JJN14_04890) rexB 990973..994248 (+) 3276 WP_201059101.1 ATP-dependent nuclease subunit B Machinery gene
  JJN14_RS04895 (JJN14_04895) rexA 994245..997895 (+) 3651 WP_201059102.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  JJN14_RS04900 (JJN14_04900) - 997914..999092 (+) 1179 WP_201059103.1 hypothetical protein -

Sequence

Protein


Download         Length: 1091 a.a.        Molecular weight: 124668.38 Da        Isoelectric Point: 5.5373

>NTDB_id=458223 JJN14_RS04890 WP_201059101.1 990973..994248(+) (rexB) [Streptococcus mitis strain S022-V7-A3]
MKLLYTDIRTSLTEILTREAEELVAVGKRVFYIAPNSLSFEKERAVLECLSQQASFEITVTRFAQMARYLILNDLPAKTS
LDDIGLGMAFYKCLVELDPKDLRVYGAIKQEPQFIQQLIDLYHEMTTAQMSFLDLESLTDEDKRADLLLIFEKVTAYLNQ
GLLAQGSQLSHLIEAIENDKVSSDFSQIALVIDGFTRFSAEEERIVDLLHGKGVEIVIGAYASKKAYTSPFAEGNLYQAS
VEFLHHLAAKYQTPAQDRSQTHEKTDSFDKASRLLESSYDFTELTLDVDEKDRENLQIWSCLTQKEELELVARSIRQKLH
ENSDLSYKHFRILLGDVASYQLSLKTIFDQYQIPFYLGRSEFMAHHPLTQFVESILALKRYRFRQEDLINLLRTGLYTDL
RQADIDAFEQYIRYLGINCLPAFQQTFTKSHHGKFNLERLNALRLRILTPLETLFASRKQKAENLLQKWNSFLKEGAVTK
QLQDLTATMEALEQERQAEVWKAFCHVLEQFATVFAGSQVSLEDFLALLHSGMSLSQYRTIPATVDTVLVQSYDLIAPLT
ADFVYAIGLTQDNLPKIAQNTSLLTDEERQSLNQATEDGAQLLIASSENLKKNRYTMLSLVNSARKQLVLSAPSLFNESE
SKESAYLQELVSFGFSRREKRMNHKGLSKEDMGSYHSLLSSLVAYHQQGETSDTEQDLTFIKVLARVMGKKLDQQGLENP
ALPTSPSSKQLSKDTLQALYPAEQEFYLSTSGLTEFYRNQYSYFLRYVLGLQDELRLRPDARSHGNFLHRIFERALQLPD
EDSFDKRLEQAIQETSQEREFEAIYQESLEAQFTKEVLLDVARTTGHILRHNPAIETIKEEANFGGKEQAFIQLDNGRSV
FVRGKVDRIDRLKADGAIGVVDYKSSLTQFQFPHFFNGLNSQLPTYLAALKREGEQNFFGAMYLEMAEPVQSLMAVKSLA
GAVVEASKSMKYQGLFLEKESSHLGEFYNKNKANQLTDEEFQLLLDYNAHLYKKAAEKILAGQFAINPYTENGRSIAPYV
QQHQAITGFEANYHLGQARFLQKLDLADGKRLVGEKLKQAWFEKIREELNR

Nucleotide


Download         Length: 3276 bp        

>NTDB_id=458223 JJN14_RS04890 WP_201059101.1 990973..994248(+) (rexB) [Streptococcus mitis strain S022-V7-A3]
ATGAAATTACTTTATACTGATATTCGGACTTCTTTGACAGAAATTCTAACCAGGGAGGCGGAAGAGCTAGTTGCTGTGGG
CAAGCGGGTCTTCTATATCGCCCCTAACTCTCTTTCTTTTGAAAAGGAACGCGCCGTGCTGGAATGCTTGTCCCAGCAGG
CTTCTTTTGAGATTACTGTCACGCGCTTTGCGCAGATGGCTCGTTACCTGATTTTGAATGATTTGCCTGCAAAGACCAGT
CTTGATGACATCGGTCTTGGGATGGCTTTTTATAAATGTCTTGTCGAACTTGATCCCAAGGACTTACGTGTTTATGGAGC
TATCAAGCAGGAGCCTCAATTTATCCAGCAGTTGATTGATCTTTATCACGAGATGACGACTGCTCAAATGAGTTTTTTGG
ATTTGGAGAGTTTGACGGATGAGGACAAGAGGGCCGATTTACTCTTGATTTTTGAGAAAGTAACGGCATATCTCAATCAA
GGCCTGTTAGCTCAGGGAAGCCAGTTGTCCCATTTGATTGAGGCTATTGAGAATGACAAAGTAAGTAGTGATTTTAGTCA
AATCGCCTTGGTCATTGATGGATTTACCCGTTTTTCTGCTGAGGAAGAGCGGATTGTGGACCTACTTCATGGCAAGGGTG
TTGAGATTGTCATTGGAGCCTATGCTAGTAAGAAAGCCTATACCAGTCCATTCGCTGAAGGCAATCTCTATCAAGCCAGT
GTGGAGTTTCTCCATCATTTAGCTGCTAAATACCAAACACCTGCTCAAGACCGTTCTCAGACTCATGAGAAAACGGATAG
TTTTGACAAGGCCTCTCGTTTGCTAGAGTCTTCTTATGACTTTACAGAGCTCACTTTGGATGTCGATGAGAAAGACCGTG
AAAACTTACAAATCTGGTCTTGTTTGACACAAAAGGAGGAGTTGGAGCTAGTAGCCCGTAGCATTCGTCAGAAATTACAT
GAGAACTCAGACCTGAGTTACAAGCATTTTCGTATTCTATTGGGGGATGTAGCTTCTTATCAATTATCGCTGAAAACCAT
TTTTGACCAGTATCAGATTCCTTTCTATCTTGGTAGAAGCGAATTCATGGCGCATCATCCCTTGACACAGTTTGTCGAGT
CTATCTTGGCTTTAAAACGCTACCGTTTTCGTCAGGAGGATTTGATTAACCTTCTCAGAACAGGTTTGTATACCGACCTT
AGACAAGCTGATATTGATGCTTTTGAACAATATATCCGCTATCTTGGTATCAATTGCTTGCCAGCCTTTCAGCAAACCTT
TACCAAATCCCACCATGGAAAATTTAATCTGGAACGTTTAAATGCTCTTCGTCTGCGTATTTTAACACCTCTTGAAACCC
TCTTTGCCAGTCGAAAACAAAAGGCTGAAAATCTCCTACAAAAATGGAATAGCTTTCTAAAAGAAGGAGCTGTTACCAAG
CAACTGCAAGATTTGACAGCTACTATGGAAGCTCTTGAACAGGAAAGACAGGCCGAAGTTTGGAAGGCATTCTGTCATGT
TTTAGAACAATTTGCGACCGTTTTTGCTGGTTCACAGGTTAGTCTGGAGGATTTCTTGGCCTTGCTCCATTCTGGAATGA
GTTTGTCCCAATACCGTACCATTCCAGCGACAGTGGACACTGTTCTGGTGCAGAGTTACGATTTGATTGCACCACTGACT
GCTGACTTTGTCTATGCCATTGGGCTGACTCAGGACAATTTACCAAAAATTGCGCAAAACACCAGTCTTTTGACAGACGA
AGAAAGACAGAGCCTAAACCAAGCGACAGAAGATGGGGCGCAATTGCTGATTGCCAGCAGTGAAAACCTCAAGAAAAATC
GCTATACTATGCTTTCCTTAGTCAATTCTGCCCGTAAGCAGCTGGTCTTGTCGGCTCCAAGCCTTTTTAATGAAAGTGAA
AGCAAGGAGTCAGCCTATCTTCAAGAGCTGGTGAGTTTTGGATTTAGTCGAAGAGAGAAGAGGATGAATCACAAAGGGCT
GTCTAAGGAAGACATGGGTTCATATCACAGTCTTTTGTCGAGTCTGGTTGCCTATCACCAGCAGGGCGAGACGAGTGATA
CTGAGCAAGATTTGACATTTATTAAGGTTCTGGCGCGTGTCATGGGTAAAAAACTAGACCAGCAAGGTCTGGAGAATCCA
GCCCTCCCAACCAGTCCAAGCAGTAAGCAGTTGAGCAAGGATACCTTGCAGGCTCTCTATCCAGCTGAACAGGAATTTTA
CTTATCTACGTCCGGTTTGACCGAGTTTTACCGGAACCAATACAGTTATTTCCTCCGCTACGTGTTAGGCTTGCAGGATG
AATTACGTTTGCGTCCGGATGCTCGCAGTCATGGAAATTTCTTGCACCGTATTTTTGAACGTGCCTTGCAGTTACCTGAC
GAAGATTCCTTTGACAAACGTCTAGAACAAGCTATCCAAGAAACCAGTCAAGAACGCGAATTTGAAGCTATATATCAAGA
AAGTTTGGAAGCCCAGTTTACCAAGGAAGTCCTACTTGATGTAGCTCGGACGACTGGCCATATTCTCCGACACAATCCAG
CCATCGAAACCATCAAAGAAGAAGCAAATTTTGGTGGAAAAGAGCAAGCCTTTATTCAATTGGACAATGGTCGCAGTGTC
TTTGTACGAGGTAAGGTTGACCGAATTGACCGTTTGAAAGCTGATGGAGCGATAGGGGTAGTAGACTACAAGTCTAGTCT
AACTCAGTTCCAATTTCCTCATTTCTTTAATGGGCTCAATTCCCAGTTGCCAACTTATCTAGCTGCCTTAAAGAGAGAAG
GGGAGCAGAACTTTTTCGGCGCTATGTACTTGGAAATGGCTGAGCCTGTCCAATCTTTGATGGCCGTTAAAAGTCTGGCA
GGTGCAGTAGTAGAAGCTAGCAAATCTATGAAATACCAAGGGCTATTTTTAGAAAAAGAAAGCAGTCATTTGGGTGAATT
TTACAACAAAAACAAGGCTAATCAGCTGACAGATGAGGAATTCCAGCTCCTACTGGACTACAATGCCCATCTTTACAAGA
AAGCAGCTGAGAAGATTTTAGCAGGCCAGTTCGCCATTAATCCTTATACCGAAAATGGCAGAAGTATTGCCCCATACGTC
CAGCAACACCAAGCCATCACCGGATTTGAAGCCAATTATCACTTGGGTCAAGCCCGTTTCCTACAAAAGTTGGACTTGGC
TGACGGTAAACGTCTGGTCGGAGAAAAACTCAAGCAAGCTTGGTTTGAAAAAATAAGAGAGGAGTTGAATCGATGA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(748-1030)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

94.042

100

0.94