Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AVCG78_RS08025 Genome accession   NZ_CP056047
Coordinates   1684291..1685379 (-) Length   362 a.a.
NCBI ID   WP_015916255.1    Uniprot ID   B9JX56
Organism   Agrobacterium vitis strain CG78     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1679291..1690379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVCG78_RS08015 (AVCG78_08010) - 1679994..1681391 (-) 1398 WP_081355318.1 amidase -
  AVCG78_RS08020 (AVCG78_08015) alaS 1681458..1684121 (-) 2664 WP_071204994.1 alanine--tRNA ligase -
  AVCG78_RS08025 (AVCG78_08020) recA 1684291..1685379 (-) 1089 WP_015916255.1 recombinase RecA Machinery gene
  AVCG78_RS08030 (AVCG78_08025) - 1685626..1686585 (+) 960 WP_071204996.1 carbohydrate kinase family protein -
  AVCG78_RS08035 (AVCG78_08030) - 1686588..1687511 (+) 924 WP_071204998.1 pseudouridine-5'-phosphate glycosidase -
  AVCG78_RS08040 (AVCG78_08035) lexA 1687902..1688621 (+) 720 WP_060717064.1 transcriptional repressor LexA -

Sequence

Protein


Download         Length: 362 a.a.        Molecular weight: 38769.39 Da        Isoelectric Point: 5.0624

>NTDB_id=458053 AVCG78_RS08025 WP_015916255.1 1684291..1685379(-) (recA) [Agrobacterium vitis strain CG78]
MSQNSLRLVEDKTVDKSKALEAALSQIERSFGKGSIMKLGANEKIVEVETVSTGSLSLDIALGIGGLPKGRIIEIYGPES
SGKTTLALQTIAEAQKKGGVCAFVDAEHALDPVYARKLGVDLQNLLISQPDTGEQALEITDTLVRSGAIDVLVIDSVAAL
TPKAEIEGEMGDSLPGMQARLMSQALRKLTGSISRSNCMVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIG
AVKDREEIVGNQTRVKVVKNKMAPPFKQVEFDIMYGEGVSKTGELVDLGVKAGIVEKAGAWFSYNSQRLGQGRENAKIFL
RDNPAVADEIETALRQNAGLIAERFLENGGPDANDSVGLDDA

Nucleotide


Download         Length: 1089 bp        

>NTDB_id=458053 AVCG78_RS08025 WP_015916255.1 1684291..1685379(-) (recA) [Agrobacterium vitis strain CG78]
ATGTCACAAAATTCTTTGCGGCTCGTAGAGGACAAAACGGTGGATAAAAGCAAGGCATTGGAAGCGGCCCTGTCGCAGAT
CGAGCGATCGTTCGGCAAGGGCTCGATCATGAAGCTCGGCGCGAACGAGAAAATCGTGGAGGTTGAAACCGTATCGACAG
GCTCTCTCAGCCTCGATATCGCGCTCGGCATTGGTGGTCTTCCCAAAGGCCGTATCATTGAAATTTATGGACCGGAAAGC
TCGGGTAAAACGACGCTTGCATTGCAAACCATTGCCGAGGCGCAGAAAAAGGGCGGCGTTTGCGCTTTTGTCGATGCCGA
GCATGCGCTTGATCCGGTTTATGCCCGCAAACTGGGTGTTGATCTCCAGAATTTGCTGATCTCACAGCCAGATACCGGCG
AACAGGCACTGGAAATCACCGATACGCTGGTGCGTTCGGGGGCGATCGATGTGCTGGTGATCGACTCGGTCGCGGCCTTG
ACACCGAAAGCTGAAATCGAAGGCGAAATGGGTGACAGTCTGCCGGGCATGCAGGCACGGTTGATGAGCCAGGCGCTGCG
CAAGCTGACGGGCTCGATCTCGCGTTCGAACTGCATGGTGGTTTTCATCAACCAGATTCGTATGAAGATTGGCGTGATGT
TCGGTTCCCCGGAAACGACGACCGGTGGTAACGCGTTGAAATTCTACGCTTCGGTTCGTCTCGATATTCGCCGTATCGGC
GCGGTCAAGGACCGGGAAGAGATCGTTGGCAACCAGACCCGCGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCCTTCAA
GCAGGTGGAATTCGACATCATGTATGGCGAAGGCGTGTCGAAGACCGGTGAATTGGTCGATCTGGGCGTCAAGGCTGGGA
TTGTTGAGAAGGCCGGTGCGTGGTTTTCCTATAATAGCCAGCGCTTGGGGCAGGGCCGGGAAAATGCCAAGATCTTCCTG
CGCGATAACCCTGCGGTTGCCGATGAAATCGAAACGGCACTTCGCCAGAATGCCGGTCTGATCGCCGAGCGTTTTCTTGA
AAATGGCGGTCCGGACGCCAATGACAGCGTCGGTCTTGACGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B9JX56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baumannii D1279779

72.981

88.95

0.649
  recA Acinetobacter baylyi ADP1

72.671

88.95

0.646
  recA Neisseria gonorrhoeae MS11

67.449

94.199

0.635
  recA Neisseria gonorrhoeae MS11

67.449

94.199

0.635
  recA Neisseria gonorrhoeae strain FA1090

67.449

94.199

0.635
  recA Vibrio cholerae strain A1552

68.657

92.541

0.635
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.657

92.541

0.635
  recA Glaesserella parasuis strain SC1401

67.647

93.923

0.635
  recA Ralstonia pseudosolanacearum GMI1000

71.975

86.74

0.624
  recA Pseudomonas stutzeri DSM 10701

68.536

88.674

0.608
  recA Helicobacter pylori strain NCTC11637

65.031

90.055

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

90.331

0.586
  recA Helicobacter pylori 26695

64.724

90.055

0.583
  recA Bacillus subtilis subsp. subtilis str. 168

64.11

90.055

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

90.331

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.261

91.989

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

61.162

90.331

0.552
  recA Streptococcus mitis NCTC 12261

59.819

91.436

0.547
  recA Streptococcus mitis SK321

59.819

91.436

0.547
  recA Lactococcus lactis subsp. cremoris KW2

59.104

92.541

0.547
  recA Streptococcus pneumoniae R6

59.517

91.436

0.544
  recA Streptococcus pneumoniae Rx1

59.517

91.436

0.544
  recA Streptococcus pneumoniae D39

59.517

91.436

0.544
  recA Streptococcus pneumoniae TIGR4

59.517

91.436

0.544
  recA Streptococcus pyogenes NZ131

58.663

90.884

0.533
  recA Streptococcus mutans UA159

57.958

91.989

0.533