Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HLB43_RS05240 | Genome accession | NZ_CP055224 |
| Coordinates | 1179191..1180264 (+) | Length | 357 a.a. |
| NCBI ID | WP_011094881.1 | Uniprot ID | - |
| Organism | Pectobacterium atrosepticum strain Green1 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1110243..1184068 | 1179191..1180264 | within | 0 |
Gene organization within MGE regions
Location: 1110243..1184068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HLB43_RS04915 (HLB43_04915) | - | 1110243..1112279 (+) | 2037 | WP_011094936.1 | type VI secretion system tip protein VgrG | - |
| HLB43_RS04920 (HLB43_04920) | - | 1112289..1113662 (+) | 1374 | WP_011094935.1 | PAAR domain-containing protein | - |
| HLB43_RS04925 (HLB43_04925) | - | 1113743..1114441 (+) | 699 | WP_039293252.1 | ankyrin repeat domain-containing protein | - |
| HLB43_RS04930 (HLB43_04930) | - | 1114507..1115205 (+) | 699 | WP_080708294.1 | ankyrin repeat domain-containing protein | - |
| HLB43_RS04935 (HLB43_04935) | - | 1115374..1116330 (+) | 957 | WP_011094932.1 | DUF4123 domain-containing protein | - |
| HLB43_RS04940 (HLB43_04940) | - | 1116327..1117244 (+) | 918 | WP_011094931.1 | DUF4123 domain-containing protein | - |
| HLB43_RS04945 (HLB43_04945) | - | 1117265..1122208 (+) | 4944 | WP_215216115.1 | RHS repeat-associated core domain-containing protein | - |
| HLB43_RS04950 (HLB43_04950) | - | 1122205..1122576 (+) | 372 | WP_205558796.1 | hypothetical protein | - |
| HLB43_RS04955 (HLB43_04955) | - | 1122651..1122995 (-) | 345 | WP_215216116.1 | SymE family type I addiction module toxin | - |
| HLB43_RS04960 (HLB43_04960) | - | 1122992..1123321 (-) | 330 | WP_180787449.1 | SymE family type I addiction module toxin | - |
| HLB43_RS04965 (HLB43_04965) | - | 1123404..1123799 (-) | 396 | WP_193401204.1 | helix-turn-helix transcriptional regulator | - |
| HLB43_RS04970 (HLB43_04970) | - | 1123898..1126792 (+) | 2895 | WP_215216117.1 | CHC2 zinc finger domain-containing protein | - |
| HLB43_RS04975 (HLB43_04975) | xerC | 1126837..1127895 (+) | 1059 | WP_215216118.1 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS04980 (HLB43_04980) | - | 1128900..1129361 (+) | 462 | WP_225182074.1 | polymorphic toxin type 30 domain-containing protein | - |
| HLB43_RS04985 (HLB43_04985) | - | 1129358..1129729 (+) | 372 | WP_205558796.1 | hypothetical protein | - |
| HLB43_RS04990 (HLB43_04990) | - | 1129804..1130148 (-) | 345 | WP_215216116.1 | SymE family type I addiction module toxin | - |
| HLB43_RS04995 (HLB43_04995) | - | 1130145..1130474 (-) | 330 | WP_180787449.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05000 (HLB43_05000) | - | 1130557..1130952 (-) | 396 | WP_193401204.1 | helix-turn-helix transcriptional regulator | - |
| HLB43_RS05005 (HLB43_05005) | - | 1131051..1133945 (+) | 2895 | WP_215216117.1 | CHC2 zinc finger domain-containing protein | - |
| HLB43_RS05010 (HLB43_05010) | xerC | 1133990..1135048 (+) | 1059 | WP_215216118.1 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS05015 (HLB43_05015) | - | 1136125..1136505 (+) | 381 | WP_231848488.1 | type IV secretion protein Rhs | - |
| HLB43_RS05020 (HLB43_05020) | - | 1136502..1136831 (+) | 330 | WP_011094917.1 | hypothetical protein | - |
| HLB43_RS05025 (HLB43_05025) | - | 1136897..1137121 (-) | 225 | WP_011094916.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05030 (HLB43_05030) | - | 1137200..1137571 (-) | 372 | WP_039289056.1 | helix-turn-helix domain-containing protein | - |
| HLB43_RS05035 (HLB43_05035) | - | 1137724..1140615 (+) | 2892 | WP_011094914.1 | DNA primase | - |
| HLB43_RS05040 (HLB43_05040) | xerC | 1140645..1141703 (+) | 1059 | WP_011094913.1 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS05045 (HLB43_05045) | - | 1142661..1143077 (+) | 417 | WP_011094909.1 | hypothetical protein | - |
| HLB43_RS05050 (HLB43_05050) | - | 1143077..1143379 (+) | 303 | WP_251388911.1 | hypothetical protein | - |
| HLB43_RS05055 (HLB43_05055) | - | 1143488..1143832 (-) | 345 | WP_011094907.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05060 (HLB43_05060) | - | 1143829..1144158 (-) | 330 | WP_011094906.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05065 (HLB43_05065) | - | 1144236..1144601 (-) | 366 | WP_226302361.1 | helix-turn-helix domain-containing protein | - |
| HLB43_RS05070 (HLB43_05070) | - | 1144751..1147648 (+) | 2898 | WP_100675258.1 | CHC2 zinc finger domain-containing protein | - |
| HLB43_RS05075 (HLB43_05075) | xerC | 1147694..1148737 (+) | 1044 | WP_100675257.1 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS05080 (HLB43_05080) | - | 1149733..1150143 (+) | 411 | WP_233505386.1 | HNH endonuclease | - |
| HLB43_RS05085 (HLB43_05085) | - | 1150153..1150596 (+) | 444 | WP_100675255.1 | SMI1/KNR4 family protein | - |
| HLB43_RS05090 (HLB43_05090) | - | 1150679..1151023 (-) | 345 | WP_100675254.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05095 (HLB43_05095) | - | 1151020..1151349 (-) | 330 | WP_103791670.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05100 (HLB43_05100) | - | 1151427..1151759 (-) | 333 | WP_100675298.1 | helix-turn-helix transcriptional regulator | - |
| HLB43_RS05105 (HLB43_05105) | - | 1151894..1154800 (+) | 2907 | Protein_1001 | CHC2 zinc finger domain-containing protein | - |
| HLB43_RS05110 (HLB43_05110) | xerC | 1154845..1155866 (+) | 1022 | Protein_1002 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS05115 (HLB43_05115) | - | 1156861..1157271 (+) | 411 | WP_233505386.1 | HNH endonuclease | - |
| HLB43_RS05120 (HLB43_05120) | - | 1157281..1157724 (+) | 444 | WP_100675255.1 | SMI1/KNR4 family protein | - |
| HLB43_RS05125 (HLB43_05125) | - | 1157807..1158118 (-) | 312 | WP_215216167.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05130 (HLB43_05130) | - | 1158147..1158476 (-) | 330 | WP_100675253.1 | SymE family type I addiction module toxin | - |
| HLB43_RS05135 (HLB43_05135) | - | 1158554..1158886 (-) | 333 | WP_100675298.1 | helix-turn-helix transcriptional regulator | - |
| HLB43_RS05140 (HLB43_05140) | - | 1159022..1161928 (+) | 2907 | WP_100675252.1 | CHC2 zinc finger domain-containing protein | - |
| HLB43_RS05145 (HLB43_05145) | xerC | 1161973..1162995 (+) | 1023 | WP_011094903.1 | site-specific tyrosine recombinase XerC | - |
| HLB43_RS05150 (HLB43_05150) | - | 1163710..1163877 (+) | 168 | WP_215216119.1 | hypothetical protein | - |
| HLB43_RS05155 (HLB43_05155) | - | 1163980..1164357 (+) | 378 | WP_228729542.1 | hypothetical protein | - |
| HLB43_RS05160 (HLB43_05160) | - | 1164362..1164646 (+) | 285 | WP_011094900.1 | hypothetical protein | - |
| HLB43_RS22365 (HLB43_05165) | - | 1164732..1164908 (-) | 177 | Protein_1013 | SymE family type I addiction module toxin | - |
| HLB43_RS05170 (HLB43_05170) | - | 1164898..1165378 (+) | 481 | Protein_1014 | RHS repeat-associated core domain-containing protein | - |
| HLB43_RS22065 | - | 1165373..1165738 (+) | 366 | WP_181023465.1 | polymorphic toxin type 50 domain-containing protein | - |
| HLB43_RS05175 (HLB43_05175) | - | 1165757..1166035 (+) | 279 | WP_226302347.1 | hypothetical protein | - |
| HLB43_RS05180 (HLB43_05180) | pvcA | 1167300..1168265 (+) | 966 | WP_039295182.1 | L-tyrosine isonitrile synthase | - |
| HLB43_RS05185 (HLB43_05185) | - | 1168336..1169187 (+) | 852 | WP_039293227.1 | TauD/TfdA family dioxygenase | - |
| HLB43_RS05190 (HLB43_05190) | - | 1169199..1170539 (+) | 1341 | WP_011094891.1 | nucleotide disphospho-sugar-binding domain-containing protein | - |
| HLB43_RS05195 (HLB43_05195) | - | 1170671..1171093 (+) | 423 | WP_011094890.1 | bacteriocin immunity protein | - |
| HLB43_RS05200 (HLB43_05200) | grxB | 1171192..1171827 (-) | 636 | WP_011094889.1 | glutaredoxin 2 | - |
| HLB43_RS05205 (HLB43_05205) | - | 1172044..1172925 (+) | 882 | WP_011094888.1 | LysR family transcriptional regulator | - |
| HLB43_RS05210 (HLB43_05210) | - | 1173047..1174243 (+) | 1197 | WP_039293223.1 | MFS transporter | - |
| HLB43_RS05215 (HLB43_05215) | - | 1174503..1176101 (-) | 1599 | WP_215216120.1 | sensor domain-containing diguanylate cyclase | - |
| HLB43_RS05220 (HLB43_05220) | - | 1176293..1176967 (-) | 675 | WP_011094885.1 | MarC family NAAT transporter | - |
| HLB43_RS05225 (HLB43_05225) | - | 1177050..1177538 (-) | 489 | WP_011094884.1 | SRPBCC family protein | - |
| HLB43_RS05230 (HLB43_05230) | - | 1178018..1178353 (+) | 336 | WP_011094883.1 | hypothetical protein | - |
| HLB43_RS05235 (HLB43_05235) | pncC | 1178589..1179083 (+) | 495 | WP_039293219.1 | nicotinamide-nucleotide amidase | - |
| HLB43_RS05240 (HLB43_05240) | recA | 1179191..1180264 (+) | 1074 | WP_011094881.1 | recombinase RecA | Machinery gene |
| HLB43_RS05245 (HLB43_05245) | recX | 1180310..1180798 (+) | 489 | WP_039293215.1 | recombination regulator RecX | - |
| HLB43_RS05250 (HLB43_05250) | alaS | 1180936..1183563 (+) | 2628 | WP_039293212.1 | alanine--tRNA ligase | - |
| HLB43_RS05255 (HLB43_05255) | csrA | 1183883..1184068 (+) | 186 | WP_005972168.1 | carbon storage regulator CsrA | - |
Sequence
Protein
Download Length: 357 a.a. Molecular weight: 38283.86 Da Isoelectric Point: 5.3354
>NTDB_id=456897 HLB43_RS05240 WP_011094881.1 1179191..1180264(+) (recA) [Pectobacterium atrosepticum strain Green1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTISAEL
DKKLREMLLHKGNELKPAAAGNSHDEDELAGEGKEEF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQANTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVG
SETRVKVVKNKVAAPFKQAEFQILYGEGINIHGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANACNFLKENPTISAEL
DKKLREMLLHKGNELKPAAAGNSHDEDELAGEGKEEF
Nucleotide
Download Length: 1074 bp
>NTDB_id=456897 HLB43_RS05240 WP_011094881.1 1179191..1180264(+) (recA) [Pectobacterium atrosepticum strain Green1]
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAAGATCGCTCAATGGATGTTGAAACCATTTCTACTGGTTCTTTGTCCCTTGATATTGCTTTAGGTG
CCGGCGGTTTACCTATGGGCCGCATCGTTGAGATTTATGGCCCAGAATCCTCTGGTAAAACCACGCTGACCTTACAGGTG
ATTGCTGCTGCTCAGCGCGAAGGCAAAACCTGTGCGTTTATCGATGCTGAACATGCGTTGGACCCTATTTATGCGAAAAA
ACTTGGTGTAGATATTGATAATCTGCTGTGTTCGCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCACTAA
CGCGCTCTGGTGCTGTTGACGTTATTATCGTCGACTCCGTTGCAGCGCTGACGCCAAAAGCTGAAATTGAAGGCGAAATT
GGTGACTCTCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAATTGGCGGGTAACCTGAAGCAAGCTAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGCGGTA
ACGCACTGAAGTTTTATGCCTCTGTTCGTTTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTCGTCGGT
AGCGAAACCCGCGTTAAAGTTGTGAAGAATAAAGTGGCAGCACCGTTCAAGCAGGCTGAATTCCAAATTTTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAATCCGACGATTTCTGCTGAACTG
GATAAGAAATTGCGCGAAATGCTGCTGCATAAAGGCAATGAGTTGAAGCCGGCTGCTGCGGGAAATAGCCATGACGAGGA
TGAACTCGCTGGCGAAGGTAAAGAAGAGTTTTAA
ATGGCTATTGATGAGAACAAACAAAAGGCACTTGCGGCAGCACTGGGCCAAATCGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGGTTGGGCGAAGATCGCTCAATGGATGTTGAAACCATTTCTACTGGTTCTTTGTCCCTTGATATTGCTTTAGGTG
CCGGCGGTTTACCTATGGGCCGCATCGTTGAGATTTATGGCCCAGAATCCTCTGGTAAAACCACGCTGACCTTACAGGTG
ATTGCTGCTGCTCAGCGCGAAGGCAAAACCTGTGCGTTTATCGATGCTGAACATGCGTTGGACCCTATTTATGCGAAAAA
ACTTGGTGTAGATATTGATAATCTGCTGTGTTCGCAGCCGGATACCGGCGAGCAGGCGTTGGAGATTTGTGATGCACTAA
CGCGCTCTGGTGCTGTTGACGTTATTATCGTCGACTCCGTTGCAGCGCTGACGCCAAAAGCTGAAATTGAAGGCGAAATT
GGTGACTCTCACATGGGGCTGGCTGCACGTATGATGAGCCAGGCTATGCGTAAATTGGCGGGTAACCTGAAGCAAGCTAA
TACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTTGGTAACCCTGAAACCACTACCGGCGGTA
ACGCACTGAAGTTTTATGCCTCTGTTCGTTTGGATATTCGTCGTACTGGCGCTATCAAGGAAGGCGAAGAAGTCGTCGGT
AGCGAAACCCGCGTTAAAGTTGTGAAGAATAAAGTGGCAGCACCGTTCAAGCAGGCTGAATTCCAAATTTTGTACGGCGA
AGGCATCAATATCCACGGTGAGCTGGTTGATCTGGGTGTGAAACACAAGCTGATCGAAAAAGCGGGTGCCTGGTATAGCT
ATAACGGCGACAAGATCGGTCAGGGTAAAGCGAATGCCTGTAATTTCCTGAAAGAGAATCCGACGATTTCTGCTGAACTG
GATAAGAAATTGCGCGAAATGCTGCTGCATAAAGGCAATGAGTTGAAGCCGGCTGCTGCGGGAAATAGCCATGACGAGGA
TGAACTCGCTGGCGAAGGTAAAGAAGAGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.