Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HUW35_RS12325 Genome accession   NZ_CP055157
Coordinates   3036973..3038004 (+) Length   343 a.a.
NCBI ID   WP_181252600.1    Uniprot ID   A0A7H8PZG1
Organism   Microbulbifer sp. YPW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3031973..3043004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUW35_RS12310 (HUW35_12315) - 3032998..3035169 (+) 2172 WP_181252597.1 prolyl oligopeptidase family protein -
  HUW35_RS12315 (HUW35_12320) - 3035352..3036239 (+) 888 WP_181252598.1 MaoC/PaaZ C-terminal domain-containing protein -
  HUW35_RS12320 (HUW35_12325) - 3036323..3036835 (+) 513 WP_181252599.1 CinA family protein -
  HUW35_RS12325 (HUW35_12330) recA 3036973..3038004 (+) 1032 WP_181252600.1 recombinase RecA Machinery gene
  HUW35_RS12330 (HUW35_12335) - 3038007..3038570 (+) 564 WP_255463267.1 regulatory protein RecX -
  HUW35_RS12335 (HUW35_12340) glpK 3038685..3040172 (+) 1488 WP_181252601.1 glycerol kinase GlpK -
  HUW35_RS12340 (HUW35_12345) - 3040311..3041180 (+) 870 WP_181252602.1 alpha/beta hydrolase -
  HUW35_RS12345 (HUW35_12350) - 3041318..3041506 (+) 189 WP_078084933.1 Trm112 family protein -
  HUW35_RS12350 (HUW35_12355) - 3041552..3041914 (+) 363 WP_181252603.1 histidine triad nucleotide-binding protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36879.22 Da        Isoelectric Point: 5.0468

>NTDB_id=456446 HUW35_RS12325 WP_181252600.1 3036973..3038004(+) (recA) [Microbulbifer sp. YPW1]
MDSNKDKALQAALSQIERQFGKGTVMRMGDKERVRIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRKGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLCVFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKEGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINLLGEIVDYGVKMGLVDKAGAWYSYKGDKIGQGKANAVKFLKENVDIRNDIES
QLRAQLLGDVVAAPAEEVEAAED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=456446 HUW35_RS12325 WP_181252600.1 3036973..3038004(+) (recA) [Microbulbifer sp. YPW1]
ATGGATTCCAACAAAGACAAGGCTTTACAGGCGGCGCTGTCACAGATCGAGCGTCAGTTCGGCAAGGGCACCGTCATGCG
CATGGGGGATAAAGAGCGCGTGCGTATCCCCGCGATCTCCACCGGTTCCCTCGGCCTGGACGTGGCACTCGGCATTGGCG
GCCTGCCTCGCGGTCGTATTGTTGAGATCTACGGACCTGAATCCTCTGGTAAAACCACTCTGACCCTGCAGGTCATTGCG
GAAGCCCAGCGCAAGGGCGGCACCTGTGCCTTTGTAGATGCGGAGCACGCTCTCGACCCGATTTACGCGGAGAAGCTTGG
TGTCAACGTTGACGAGCTGATCGTATCCCAGCCGGATACCGGTGAGCAGGCCCTGGAAGTGGCCGATATGCTGGTGCGCT
CCGGTGCTGTCGATGTACTGGTTGTGGACTCCGTTGCCGCGCTGACCCCGCGCGCTGAGATCGAAGGTGAAATGGGCGAT
TCCCACGTCGGCCTGCAGGCGCGACTGATGTCCCAGGCACTGCGCAAGCTCACCGGTAACATCAAGAATACCAACACCCT
GTGTGTATTCATCAACCAGATTCGTATGAAGATCGGCGTGATGTTCGGTTCTCCGGAAACCACCACCGGCGGTAACGCAC
TGAAGTTTTACTCCTCTGTACGTCTGGATATCCGTCGTATCGGCTCGGTAAAAGAGGGCGACGAAGTCGTCGGTAACGAG
ACGCGGGTGAAGGTGGTCAAGAACAAGGTGGCCCCGCCATTCAAGCAGACCGAATTCCAGATCATGTACGGCGAGGGGAT
CAACCTGCTGGGCGAGATCGTCGATTACGGTGTGAAGATGGGCCTGGTGGACAAGGCCGGTGCCTGGTATAGCTACAAGG
GCGACAAGATCGGCCAGGGCAAGGCCAATGCGGTCAAGTTCCTCAAGGAAAATGTTGATATCCGCAACGATATCGAATCC
CAGCTGCGCGCCCAGCTTCTGGGTGACGTAGTCGCCGCACCGGCGGAAGAAGTGGAAGCCGCGGAAGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H8PZG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.843

100

0.778
  recA Vibrio cholerae strain A1552

71.512

100

0.717
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.512

100

0.717
  recA Acinetobacter baylyi ADP1

74.312

95.335

0.708
  recA Acinetobacter baumannii D1279779

74.312

95.335

0.708
  recA Neisseria gonorrhoeae MS11

72

94.752

0.682
  recA Neisseria gonorrhoeae MS11

72

94.752

0.682
  recA Neisseria gonorrhoeae strain FA1090

72

94.752

0.682
  recA Ralstonia pseudosolanacearum GMI1000

70.732

95.627

0.676
  recA Glaesserella parasuis strain SC1401

71.739

93.878

0.673
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

95.335

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

93.586

0.612
  recA Helicobacter pylori 26695

60.58

100

0.609
  recA Helicobacter pylori strain NCTC11637

60.58

100

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.934

96.501

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

60.294

99.125

0.598
  recA Streptococcus mutans UA159

60.923

94.752

0.577
  recA Streptococcus pneumoniae Rx1

59.451

95.627

0.569
  recA Streptococcus mitis NCTC 12261

59.451

95.627

0.569
  recA Streptococcus pneumoniae D39

59.451

95.627

0.569
  recA Streptococcus pneumoniae R6

59.451

95.627

0.569
  recA Streptococcus pneumoniae TIGR4

59.451

95.627

0.569
  recA Streptococcus mitis SK321

59.146

95.627

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.133

94.169

0.557
  recA Streptococcus pyogenes NZ131

58.642

94.461

0.554
  recA Lactococcus lactis subsp. cremoris KW2

57.362

95.044

0.545