Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BPTD_RS12880 Genome accession   NC_017223
Coordinates   2722846..2723907 (-) Length   353 a.a.
NCBI ID   WP_003812760.1    Uniprot ID   K0MEU1
Organism   Bordetella pertussis CS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2717846..2728907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPTD_RS12860 (BPTD_2502) - 2717980..2718582 (-) 603 WP_010930988.1 DUF2889 domain-containing protein -
  BPTD_RS12865 (BPTD_2503) metE 2718787..2721081 (-) 2295 WP_010930989.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BPTD_RS12870 (BPTD_2504) - 2721243..2722172 (+) 930 WP_003812755.1 LysR family transcriptional regulator -
  BPTD_RS12875 (BPTD_2505) recX 2722247..2722813 (-) 567 WP_010930990.1 recombination regulator RecX -
  BPTD_RS12880 (BPTD_2506) recA 2722846..2723907 (-) 1062 WP_003812760.1 recombinase RecA Machinery gene
  BPTD_RS12885 (BPTD_2507) - 2724147..2724836 (+) 690 WP_003812762.1 response regulator transcription factor -
  BPTD_RS12890 (BPTD_2508) - 2724952..2726310 (+) 1359 WP_010930991.1 sensor histidine kinase -
  BPTD_RS12895 (BPTD_2509) - 2726505..2728181 (+) 1677 WP_003820458.1 MFS transporter -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37949.30 Da        Isoelectric Point: 5.1842

>NTDB_id=45632 BPTD_RS12880 WP_003812760.1 2722846..2723907(-) (recA) [Bordetella pertussis CS]
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=45632 BPTD_RS12880 WP_003812760.1 2722846..2723907(-) (recA) [Bordetella pertussis CS]
ATGGACGACAAAACCAGCAAGGCCGCCGCGGCCGAGAAAGCCAAGGCGCTGGCCGCCGCGCTGTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTATGGCGACAACGAGGTCGAACACGACATCCAGGTCGTGTCCACCGGTTCGCTGG
GGCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGATCGAGGTCTACGGCCCCGAGTCGTCCGGCAAG
ACCACGCTCACGCTGCAGGTCATCGCCGAAATGCAGAAGCTGGGCGGCACCTGCGCCTTCGTCGACGCCGAACACGCGCT
GGACGTGCAATACGCCTCCAAGCTGGGGGTCAACCTGACCGACCTGCTGATCTCCCAGCCGGACACGGGCGAGCAGGCCC
TCGAGATCACCGACGCGCTGGTGCGCTCGGGCTCGGTCGACCTGATCGTCATCGACTCGGTCGCGGCGCTGGTGCCCAAG
GCCGAAATCGAAGGCGAGATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGAC
GGCCACCATCAAGCGCACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTCAAGTTCTATTCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCCATCAAG
AAGGGCGACGAGGTGGTCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTGGCGCCGCCGTTCAAGCAGGCCGA
GTTCGACATCATGTATGGCAGCGGCATCTCGCGCGAAGGCGAAATCATCGACCTGGGCGTGCAAGCCAATGTGGTCGACA
AGTCCGGCGCCTGGTACAGCTACAGCGGCAACCGCATCGGCCAGGGCAAGGACAATGTGCGCGAGTACCTGAAAGAGCAC
AAGGAAATGGCCATCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATAGTCAGCCGCGCCGCCACCTTTCCGGCCAG
CGAAGCCGAAGACGGCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0MEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.429

99.15

0.807
  recA Pseudomonas stutzeri DSM 10701

72.566

96.034

0.697
  recA Acinetobacter baylyi ADP1

69.501

96.601

0.671
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.209

90.935

0.666
  recA Acinetobacter baumannii D1279779

73.209

90.935

0.666
  recA Vibrio cholerae strain A1552

73.209

90.935

0.666
  recA Neisseria gonorrhoeae MS11

72.086

92.351

0.666
  recA Neisseria gonorrhoeae MS11

72.086

92.351

0.666
  recA Neisseria gonorrhoeae strain FA1090

72.086

92.351

0.666
  recA Glaesserella parasuis strain SC1401

70.717

90.935

0.643
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.45

96.884

0.615
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

92.635

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

65.138

92.635

0.603
  recA Helicobacter pylori strain NCTC11637

61.808

97.167

0.601
  recA Helicobacter pylori 26695

61.516

97.167

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

63.526

93.201

0.592
  recA Streptococcus pneumoniae R6

59.706

96.317

0.575
  recA Streptococcus pneumoniae TIGR4

59.706

96.317

0.575
  recA Streptococcus pneumoniae Rx1

59.706

96.317

0.575
  recA Streptococcus pneumoniae D39

59.706

96.317

0.575
  recA Streptococcus mitis SK321

59.118

96.317

0.569
  recA Streptococcus mitis NCTC 12261

59.118

96.317

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

91.501

0.564
  recA Lactococcus lactis subsp. cremoris KW2

57.647

96.317

0.555
  recA Streptococcus pyogenes NZ131

58.507

94.901

0.555
  recA Streptococcus mutans UA159

56.522

97.734

0.552

Multiple sequence alignment