Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HUZ57_RS05210 | Genome accession | NZ_CP054992 |
| Coordinates | 1079569..1080630 (+) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Shigella flexneri strain STIN_87 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1072560..1110610 | 1079569..1080630 | within | 0 |
Gene organization within MGE regions
Location: 1072560..1110610
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUZ57_RS05165 (HUZ57_05110) | gutQ | 1072560..1073525 (-) | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
| HUZ57_RS05170 (HUZ57_05115) | srlR | 1073518..1074291 (-) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| HUZ57_RS05175 (HUZ57_05120) | gutM | 1074358..1074717 (-) | 360 | WP_000252908.1 | transcriptional regulator GutM | - |
| HUZ57_RS05180 (HUZ57_05125) | srlD | 1074822..1075601 (-) | 780 | WP_001077358.1 | sorbitol-6-phosphate dehydrogenase | - |
| HUZ57_RS05185 (HUZ57_05130) | srlB | 1075605..1075976 (-) | 372 | WP_000216194.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| HUZ57_RS05190 (HUZ57_05135) | srlE | 1075987..1076946 (-) | 960 | WP_000148878.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| HUZ57_RS05195 (HUZ57_05140) | srlA | 1076943..1077506 (-) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| HUZ57_RS05200 (HUZ57_05145) | mltB | 1077762..1078847 (+) | 1086 | WP_001295177.1 | lytic murein transglycosylase B | - |
| HUZ57_RS05205 (HUZ57_05150) | pncC | 1078992..1079489 (+) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| HUZ57_RS05210 (HUZ57_05155) | recA | 1079569..1080630 (+) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| HUZ57_RS05215 (HUZ57_05160) | recX | 1080699..1081199 (+) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| HUZ57_RS05220 (HUZ57_05165) | alaS | 1081327..1083957 (+) | 2631 | WP_000047184.1 | alanine--tRNA ligase | - |
| HUZ57_RS05225 (HUZ57_05170) | csrA | 1084192..1084377 (+) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| HUZ57_RS05255 (HUZ57_05200) | yqaB | 1085835..1086401 (+) | 567 | WP_000273290.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| HUZ57_RS05260 (HUZ57_05205) | - | 1086398..1086826 (+) | 429 | WP_001287454.1 | YqaA family protein | - |
| HUZ57_RS05265 (HUZ57_05210) | gshA | 1086899..1088455 (+) | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| HUZ57_RS05270 (HUZ57_05215) | luxS | 1088605..1089120 (+) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | - |
| HUZ57_RS05275 (HUZ57_05220) | emrB | 1089184..1090722 (-) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| HUZ57_RS05280 (HUZ57_05225) | emrA | 1090739..1091911 (-) | 1173 | WP_001326681.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| HUZ57_RS05285 (HUZ57_05230) | emrR | 1092038..1092568 (-) | 531 | WP_000378447.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| HUZ57_RS05290 (HUZ57_05235) | ygaH | 1092659..1092994 (-) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| HUZ57_RS05295 (HUZ57_05240) | ygaZ | 1092984..1093721 (-) | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| HUZ57_RS05300 (HUZ57_05245) | - | 1093845..1095029 (-) | 1185 | WP_000165680.1 | MFS transporter | - |
| HUZ57_RS05305 (HUZ57_05250) | proX | 1095221..1096213 (-) | 993 | WP_001216525.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| HUZ57_RS05310 (HUZ57_05255) | proW | 1096271..1097335 (-) | 1065 | WP_039268455.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| HUZ57_RS05315 (HUZ57_05260) | proV | 1097328..1098530 (-) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| HUZ57_RS05320 (HUZ57_05265) | nrdF | 1098884..1099843 (-) | 960 | WP_000777969.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| HUZ57_RS05325 (HUZ57_05270) | nrdE | 1099853..1101997 (-) | 2145 | WP_000246527.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| HUZ57_RS05330 (HUZ57_05275) | nrdI | 1101970..1102380 (-) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| HUZ57_RS05335 (HUZ57_05280) | nrdH | 1102377..1102622 (-) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| HUZ57_RS05340 (HUZ57_05285) | - | 1102870..1103199 (-) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| HUZ57_RS05345 (HUZ57_05290) | - | 1103351..1103695 (+) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| HUZ57_RS05350 (HUZ57_05295) | alaE | 1103732..1104181 (-) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| HUZ57_RS05355 (HUZ57_05300) | stpA | 1104850..1105254 (+) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| HUZ57_RS05360 (HUZ57_05305) | ygaP | 1105301..1105825 (-) | 525 | WP_001229442.1 | thiosulfate sulfurtransferase YgaP | - |
| HUZ57_RS05365 (HUZ57_05310) | - | 1105835..1106134 (-) | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HUZ57_RS05370 (HUZ57_05315) | - | 1106317..1106475 (+) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| HUZ57_RS05375 (HUZ57_05320) | kbp | 1106559..1107008 (+) | 450 | WP_000522415.1 | potassium binding protein Kbp | - |
| HUZ57_RS05380 (HUZ57_05325) | csiR | 1107009..1107671 (-) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| HUZ57_RS05385 (HUZ57_05330) | gabP | 1107692..1109092 (-) | 1401 | WP_001333601.1 | GABA permease | - |
| HUZ57_RS05390 (HUZ57_05335) | gabT | 1109330..1110610 (-) | 1281 | WP_001087611.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=455601 HUZ57_RS05210 WP_000963143.1 1079569..1080630(+) (recA) [Shigella flexneri strain STIN_87]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=455601 HUZ57_RS05210 WP_000963143.1 1079569..1080630(+) (recA) [Shigella flexneri strain STIN_87]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAAAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGACAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAAAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.