Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HUT23_RS06500 | Genome accession | NZ_CP054871 |
| Coordinates | 1454985..1456037 (+) | Length | 350 a.a. |
| NCBI ID | WP_011059579.1 | Uniprot ID | A0A2C9EHI1 |
| Organism | Pseudomonas protegens strain PPRAR07 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1411738..1456037 | 1454985..1456037 | within | 0 |
Gene organization within MGE regions
Location: 1411738..1456037
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUT23_RS06280 (HUT23_06285) | dnaE | 1411738..1415259 (+) | 3522 | WP_210457518.1 | DNA polymerase III subunit alpha | - |
| HUT23_RS06285 (HUT23_06290) | - | 1415399..1416346 (+) | 948 | WP_011059539.1 | acetyl-CoA carboxylase carboxyltransferase subunit alpha | - |
| HUT23_RS06290 (HUT23_06295) | tilS | 1416480..1417796 (+) | 1317 | WP_210482568.1 | tRNA lysidine(34) synthetase TilS | - |
| HUT23_RS06295 (HUT23_06300) | - | 1418071..1419702 (+) | 1632 | WP_011059541.1 | CTP synthase | - |
| HUT23_RS06300 (HUT23_06305) | kdsA | 1419708..1420553 (+) | 846 | WP_210482567.1 | 3-deoxy-8-phosphooctulonate synthase | - |
| HUT23_RS06305 (HUT23_06310) | eno | 1420709..1421998 (+) | 1290 | WP_011059543.1 | phosphopyruvate hydratase | - |
| HUT23_RS06310 (HUT23_06315) | ftsB | 1422171..1422449 (+) | 279 | WP_011059544.1 | cell division protein FtsB | - |
| HUT23_RS06315 (HUT23_06320) | ispD | 1422446..1423153 (+) | 708 | WP_019093200.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| HUT23_RS06320 (HUT23_06325) | - | 1423271..1424170 (-) | 900 | WP_011059546.1 | LysR substrate-binding domain-containing protein | - |
| HUT23_RS06325 (HUT23_06330) | - | 1424275..1425387 (+) | 1113 | WP_103407655.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| HUT23_RS06330 (HUT23_06335) | fghA | 1425474..1426319 (+) | 846 | WP_041116226.1 | S-formylglutathione hydrolase | - |
| HUT23_RS06335 (HUT23_06340) | ispF | 1426372..1426845 (+) | 474 | WP_011059549.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| HUT23_RS06340 (HUT23_06345) | truD | 1426842..1427900 (+) | 1059 | WP_210457516.1 | tRNA pseudouridine(13) synthase TruD | - |
| HUT23_RS06345 (HUT23_06350) | surE | 1427888..1428637 (+) | 750 | WP_011059551.1 | 5'/3'-nucleotidase SurE | - |
| HUT23_RS06350 (HUT23_06355) | - | 1428679..1429314 (+) | 636 | WP_169892832.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| HUT23_RS06355 (HUT23_06360) | - | 1429527..1430387 (+) | 861 | WP_041116230.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| HUT23_RS06360 (HUT23_06365) | rpoS | 1430494..1431501 (+) | 1008 | WP_072451160.1 | RNA polymerase sigma factor RpoS | - |
| HUT23_RS06365 (HUT23_06370) | fdxA | 1432013..1432336 (-) | 324 | WP_011059555.1 | ferredoxin FdxA | - |
| HUT23_RS06370 (HUT23_06375) | mutS | 1432480..1435059 (-) | 2580 | WP_011059556.1 | DNA mismatch repair protein MutS | - |
| HUT23_RS06375 (HUT23_06380) | - | 1435083..1435304 (+) | 222 | WP_176707074.1 | hypothetical protein | - |
| HUT23_RS06380 (HUT23_06385) | - | 1435246..1435992 (+) | 747 | WP_019093195.1 | XRE family transcriptional regulator | - |
| HUT23_RS06385 (HUT23_06390) | - | 1436510..1436860 (+) | 351 | WP_011059558.1 | phage holin family protein | - |
| HUT23_RS06390 (HUT23_06395) | - | 1436959..1437270 (+) | 312 | Protein_1254 | late control protein | - |
| HUT23_RS06395 (HUT23_06400) | - | 1437321..1438457 (+) | 1137 | WP_210482566.1 | glycosyl hydrolase family 18 protein | - |
| HUT23_RS06400 (HUT23_06405) | - | 1438615..1439196 (+) | 582 | WP_210482565.1 | hypothetical protein | - |
| HUT23_RS06405 (HUT23_06410) | - | 1439193..1439375 (+) | 183 | WP_011059562.1 | DUF2635 domain-containing protein | - |
| HUT23_RS06410 (HUT23_06415) | - | 1439375..1440871 (+) | 1497 | WP_072451147.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HUT23_RS06415 (HUT23_06420) | - | 1440938..1441285 (+) | 348 | WP_011059564.1 | phage tail tube protein | - |
| HUT23_RS06420 (HUT23_06425) | - | 1441282..1441578 (+) | 297 | WP_011059565.1 | phage tail assembly protein | - |
| HUT23_RS06425 (HUT23_06430) | - | 1441709..1443307 (+) | 1599 | WP_210457512.1 | phage tail protein | - |
| HUT23_RS06430 (HUT23_06435) | - | 1443297..1444541 (+) | 1245 | WP_210457511.1 | DNA circularization N-terminal domain-containing protein | - |
| HUT23_RS06435 (HUT23_06440) | - | 1444545..1445585 (+) | 1041 | WP_210482564.1 | phage baseplate assembly protein | - |
| HUT23_RS06440 (HUT23_06445) | - | 1445694..1446200 (+) | 507 | WP_011059569.1 | phage baseplate assembly protein | - |
| HUT23_RS06445 (HUT23_06450) | - | 1446203..1446601 (+) | 399 | WP_053149330.1 | phage GP46 family protein | - |
| HUT23_RS06450 (HUT23_06455) | - | 1446591..1447631 (+) | 1041 | WP_053149333.1 | baseplate J/gp47 family protein | - |
| HUT23_RS06455 (HUT23_06460) | - | 1447619..1448218 (+) | 600 | WP_210457509.1 | putative phage tail protein | - |
| HUT23_RS06460 (HUT23_06465) | - | 1448234..1449793 (+) | 1560 | WP_210482563.1 | phage tail protein | - |
| HUT23_RS06465 (HUT23_06470) | - | 1449790..1450266 (+) | 477 | WP_210457507.1 | DUF4376 domain-containing protein | - |
| HUT23_RS06470 (HUT23_06475) | - | 1450599..1451708 (+) | 1110 | WP_210457506.1 | phage tail protein | - |
| HUT23_RS06475 (HUT23_06480) | - | 1451705..1452082 (+) | 378 | WP_210457505.1 | phage tail assembly chaperone | - |
| HUT23_RS06480 (HUT23_06485) | - | 1452133..1452696 (+) | 564 | WP_210457504.1 | glycoside hydrolase family 19 protein | - |
| HUT23_RS06485 (HUT23_06490) | - | 1452805..1453320 (+) | 516 | WP_210457503.1 | hypothetical protein | - |
| HUT23_RS06490 (HUT23_06495) | - | 1453590..1454231 (+) | 642 | WP_041116265.1 | hypothetical protein | - |
| HUT23_RS06495 (HUT23_06500) | - | 1454401..1454901 (+) | 501 | WP_011059578.1 | CinA family protein | - |
| HUT23_RS06500 (HUT23_06505) | recA | 1454985..1456037 (+) | 1053 | WP_011059579.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37462.95 Da Isoelectric Point: 5.5108
>NTDB_id=455107 HUT23_RS06500 WP_011059579.1 1454985..1456037(+) (recA) [Pseudomonas protegens strain PPRAR07]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIREKLLTASPDVKANPVKETEDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=455107 HUT23_RS06500 WP_011059579.1 1454985..1456037(+) (recA) [Pseudomonas protegens strain PPRAR07]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCCACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCTTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATCATCGATCTGGGCGTGCTGCATGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCCATTTCCACCGGCTCTCTGGGTCTGGACATTGCTCTGGGCATTGGCG
GTCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAGTCGTCCGGTAAAACTACCCTGACTCTGTCGGTTATTGCC
CAGGCGCAGAAAGCCGGTGCCACTTGTGCGTTCGTCGATGCCGAGCACGCACTGGATCCGGAATACGCCGGCAAGCTGGG
TGTGAATGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCGGTTGACGTGATCATCGTCGACTCCGTGGCGGCCCTGGTGCCCAAGGCTGAAATCGAAGGTGAAATGGGCGAC
ATGCACGTGGGCTTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGCAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGCCGTACCGGCGCGGTGAAGGAAGGCGACGAAGTGGTGGGCAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCGCCATTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATCATCGATCTGGGCGTGCTGCATGGCTTCCTGGAGAAATCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAACCCGGAAATCGGCAACGCGCTGGAGAAG
CAGATCCGTGAAAAACTGCTGACTGCATCGCCAGACGTCAAAGCCAACCCGGTCAAAGAGACCGAAGACGATATGGCCGA
CGCTGATATCTGA
Similar proteins
Only experimentally validated proteins are listed.