Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HUT27_RS06220 | Genome accession | NZ_CP054867 |
| Coordinates | 1392119..1393171 (+) | Length | 350 a.a. |
| NCBI ID | WP_007923942.1 | Uniprot ID | - |
| Organism | Pseudomonas chlororaphis strain PCLRT02 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1346940..1393171 | 1392119..1393171 | within | 0 |
Gene organization within MGE regions
Location: 1346940..1393171
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUT27_RS05955 (HUT27_05955) | - | 1346940..1347836 (-) | 897 | WP_009047227.1 | LysR substrate-binding domain-containing protein | - |
| HUT27_RS05960 (HUT27_05960) | - | 1347943..1349055 (+) | 1113 | WP_007924035.1 | S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | - |
| HUT27_RS05965 (HUT27_05965) | fghA | 1349138..1349989 (+) | 852 | WP_162094495.1 | S-formylglutathione hydrolase | - |
| HUT27_RS05970 (HUT27_05970) | ispF | 1350042..1350515 (+) | 474 | WP_007924033.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| HUT27_RS05975 (HUT27_05975) | truD | 1350512..1351570 (+) | 1059 | WP_009047228.1 | tRNA pseudouridine(13) synthase TruD | - |
| HUT27_RS05980 (HUT27_05980) | surE | 1351558..1352307 (+) | 750 | WP_009047229.1 | 5'/3'-nucleotidase SurE | - |
| HUT27_RS05985 (HUT27_05985) | - | 1352349..1352984 (+) | 636 | WP_172833404.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| HUT27_RS05990 (HUT27_05990) | - | 1353194..1354027 (+) | 834 | WP_007924027.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| HUT27_RS05995 (HUT27_05995) | rpoS | 1354134..1355138 (+) | 1005 | WP_007924026.1 | RNA polymerase sigma factor RpoS | - |
| HUT27_RS06000 (HUT27_06000) | fdxA | 1355639..1355962 (-) | 324 | WP_007924025.1 | ferredoxin FdxA | - |
| HUT27_RS06005 (HUT27_06005) | mutS | 1356105..1358684 (-) | 2580 | WP_028681851.1 | DNA mismatch repair protein MutS | - |
| HUT27_RS06010 (HUT27_06010) | - | 1358872..1359606 (+) | 735 | WP_028681850.1 | XRE family transcriptional regulator | - |
| HUT27_RS06015 (HUT27_06015) | - | 1360150..1360338 (+) | 189 | WP_080768771.1 | Com family DNA-binding transcriptional regulator | - |
| HUT27_RS06020 (HUT27_06020) | - | 1360347..1360928 (+) | 582 | WP_041985729.1 | DUF642 domain-containing protein | - |
| HUT27_RS06025 (HUT27_06025) | - | 1361031..1361378 (+) | 348 | WP_009047293.1 | phage holin family protein | - |
| HUT27_RS06030 (HUT27_06030) | - | 1361545..1362309 (+) | 765 | WP_041985726.1 | N-acetylmuramoyl-L-alanine amidase | - |
| HUT27_RS06035 (HUT27_06035) | - | 1362532..1363056 (+) | 525 | WP_041985723.1 | hypothetical protein | - |
| HUT27_RS06040 (HUT27_06040) | - | 1363060..1363668 (+) | 609 | WP_041985721.1 | phage baseplate assembly protein V | - |
| HUT27_RS06045 (HUT27_06045) | - | 1363682..1364014 (+) | 333 | WP_007924012.1 | phage baseplate protein | - |
| HUT27_RS06050 (HUT27_06050) | - | 1364011..1365006 (+) | 996 | WP_053268346.1 | baseplate J/gp47 family protein | - |
| HUT27_RS06055 (HUT27_06055) | - | 1365003..1365737 (+) | 735 | WP_028681844.1 | phage tail protein I | - |
| HUT27_RS06060 (HUT27_06060) | - | 1365734..1366270 (+) | 537 | WP_041985717.1 | hypothetical protein | - |
| HUT27_RS06065 (HUT27_06065) | - | 1366374..1367126 (+) | 753 | WP_041985715.1 | hypothetical protein | - |
| HUT27_RS06070 (HUT27_06070) | - | 1367138..1367374 (+) | 237 | WP_028681841.1 | tail fiber assembly protein | - |
| HUT27_RS06075 (HUT27_06075) | - | 1367462..1367683 (+) | 222 | WP_028681840.1 | hypothetical protein | - |
| HUT27_RS06080 (HUT27_06080) | - | 1367686..1368852 (+) | 1167 | WP_009047303.1 | tail protein | - |
| HUT27_RS06085 (HUT27_06085) | - | 1368852..1369358 (+) | 507 | WP_103330353.1 | phage major tail tube protein | - |
| HUT27_RS06090 (HUT27_06090) | - | 1369485..1370066 (+) | 582 | WP_101281893.1 | phage tail assembly protein | - |
| HUT27_RS06095 (HUT27_06095) | - | 1370195..1372459 (+) | 2265 | WP_009047306.1 | phage tail tape measure protein | - |
| HUT27_RS06100 (HUT27_06100) | - | 1372459..1372842 (+) | 384 | WP_007923988.1 | phage tail protein | - |
| HUT27_RS06105 (HUT27_06105) | - | 1372835..1373047 (+) | 213 | WP_023969822.1 | tail protein X | - |
| HUT27_RS06110 (HUT27_06110) | - | 1373057..1374076 (+) | 1020 | WP_124312804.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HUT27_RS06115 (HUT27_06115) | - | 1374257..1374841 (+) | 585 | WP_103331118.1 | hypothetical protein | - |
| HUT27_RS06120 (HUT27_06120) | - | 1374838..1375020 (+) | 183 | WP_007923975.1 | DUF2635 domain-containing protein | - |
| HUT27_RS06125 (HUT27_06125) | - | 1375020..1376516 (+) | 1497 | WP_103331119.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HUT27_RS06130 (HUT27_06130) | - | 1376583..1376930 (+) | 348 | WP_007923973.1 | phage tail tube protein | - |
| HUT27_RS06135 (HUT27_06135) | - | 1376927..1377223 (+) | 297 | WP_007923972.1 | phage tail assembly protein | - |
| HUT27_RS06140 (HUT27_06140) | - | 1377354..1379429 (+) | 2076 | WP_124354631.1 | phage tail protein | - |
| HUT27_RS06145 (HUT27_06145) | - | 1379416..1380654 (+) | 1239 | WP_124312807.1 | DNA circularization N-terminal domain-containing protein | - |
| HUT27_RS06150 (HUT27_06150) | - | 1380658..1381698 (+) | 1041 | WP_009047313.1 | phage baseplate assembly protein | - |
| HUT27_RS06155 (HUT27_06155) | - | 1381816..1382325 (+) | 510 | WP_009042427.1 | phage baseplate assembly protein | - |
| HUT27_RS06160 (HUT27_06160) | - | 1382325..1382723 (+) | 399 | WP_041985697.1 | phage GP46 family protein | - |
| HUT27_RS06165 (HUT27_06165) | - | 1382713..1383753 (+) | 1041 | WP_028681832.1 | baseplate J/gp47 family protein | - |
| HUT27_RS06170 (HUT27_06170) | - | 1383741..1384340 (+) | 600 | WP_103331120.1 | putative phage tail protein | - |
| HUT27_RS06175 (HUT27_06175) | - | 1384352..1385209 (+) | 858 | WP_009042431.1 | hypothetical protein | - |
| HUT27_RS06180 (HUT27_06180) | - | 1385214..1385855 (+) | 642 | WP_009047318.1 | hypothetical protein | - |
| HUT27_RS06185 (HUT27_06185) | - | 1386239..1387792 (+) | 1554 | WP_009047319.1 | hypothetical protein | - |
| HUT27_RS06190 (HUT27_06190) | - | 1387794..1388264 (+) | 471 | WP_041985690.1 | tail fiber assembly protein | - |
| HUT27_RS06195 (HUT27_06195) | - | 1388657..1389739 (+) | 1083 | WP_009047320.1 | hypothetical protein | - |
| HUT27_RS06200 (HUT27_06200) | - | 1389747..1390349 (+) | 603 | WP_009047321.1 | tail fiber assembly protein | - |
| HUT27_RS06205 (HUT27_06205) | - | 1390371..1390934 (+) | 564 | WP_009047322.1 | glycoside hydrolase family 19 protein | - |
| HUT27_RS06210 (HUT27_06210) | - | 1390916..1391452 (+) | 537 | WP_041985687.1 | lysis system i-spanin subunit Rz | - |
| HUT27_RS06215 (HUT27_06215) | - | 1391535..1392035 (+) | 501 | WP_016702019.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
| HUT27_RS06220 (HUT27_06220) | recA | 1392119..1393171 (+) | 1053 | WP_007923942.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37450.02 Da Isoelectric Point: 5.4974
>NTDB_id=455057 HUT27_RS06220 WP_007923942.1 1392119..1393171(+) (recA) [Pseudomonas chlororaphis strain PCLRT02]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIRDKLLAPTADVKASPVNETIDDMADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVIDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKIVKNKVAPPFRQAEFQILYGKGIYLNGEIIDLGVLHGFLEKSGAWYSYQGNKIGQGKANSAKFLQDNPEIGNALEK
QIRDKLLAPTADVKASPVNETIDDMADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=455057 HUT27_RS06220 WP_007923942.1 1392119..1393171(+) (recA) [Pseudomonas chlororaphis strain PCLRT02]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGATCGCCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTGACCCTGTCCGTGATTGCC
CAGGCACAGAAGATGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCACTGGACCCGGAATACGCCGGCAAACTGGG
GGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGCGACGAAGTCGTCGGTAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGATCTGGGCGTGCTGCACGGTTTCCTCGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAATCCGGAAATCGGCAATGCCCTCGAGAAG
CAGATTCGCGACAAGCTGCTGGCTCCAACCGCTGATGTCAAAGCTTCGCCGGTCAACGAGACCATCGATGACATGGCTGA
CGCGGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGATCGCCAGGCGATCCCGGCCATTTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATCGGCG
GCCTGCCAAAAGGCCGTATTGTTGAAATCTACGGTCCGGAATCGTCCGGTAAAACCACCCTGACCCTGTCCGTGATTGCC
CAGGCACAGAAGATGGGCGCCACCTGCGCCTTCGTCGACGCCGAGCACGCACTGGACCCGGAATACGCCGGCAAACTGGG
GGTCAACGTTGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCACCGACATGCTGGTGCGCT
CCAATGCCATCGACGTGATCGTGATCGACTCCGTGGCGGCACTGGTACCCAAGGCCGAGATCGAAGGCGAGATGGGCGAC
ATGCACGTGGGCCTGCAGGCCCGCCTGATGTCCCAGGCGCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGTAACGCGC
TGAAGTTCTACGCCTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGCGACGAAGTCGTCGGTAGCGAA
ACCCGGGTCAAGATCGTCAAGAACAAGGTGGCTCCACCGTTCCGTCAGGCTGAATTCCAGATCCTGTACGGCAAGGGTAT
CTACCTGAACGGCGAGATCATCGATCTGGGCGTGCTGCACGGTTTCCTCGAGAAGTCCGGTGCCTGGTACAGCTACCAGG
GCAACAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGCAGGACAATCCGGAAATCGGCAATGCCCTCGAGAAG
CAGATTCGCGACAAGCTGCTGGCTCCAACCGCTGATGTCAAAGCTTCGCCGGTCAACGAGACCATCGATGACATGGCTGA
CGCGGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.