Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HUK68_RS00535 Genome accession   NZ_CP054840
Coordinates   115847..116983 (-) Length   378 a.a.
NCBI ID   WP_175502433.1    Uniprot ID   A0A6N1X0A7
Organism   Comamonas antarctica strain 16-35-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110847..121983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUK68_RS00510 (HUK68_00510) - 110897..111718 (-) 822 WP_244146220.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  HUK68_RS00515 (HUK68_00515) sucD 112003..112896 (-) 894 WP_175502429.1 succinate--CoA ligase subunit alpha -
  HUK68_RS00520 (HUK68_00520) sucC 112916..114076 (-) 1161 WP_175502430.1 ADP-forming succinate--CoA ligase subunit beta -
  HUK68_RS00525 (HUK68_00525) argC 114270..115202 (+) 933 WP_175502431.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  HUK68_RS00530 (HUK68_00530) recX 115335..115787 (-) 453 WP_175502432.1 recombination regulator RecX -
  HUK68_RS00535 (HUK68_00535) recA 115847..116983 (-) 1137 WP_175502433.1 recombinase RecA Machinery gene
  HUK68_RS00540 (HUK68_00540) - 117125..117628 (+) 504 WP_175502434.1 helix-turn-helix domain-containing protein -
  HUK68_RS00545 (HUK68_00545) - 117725..118399 (+) 675 WP_159915342.1 response regulator transcription factor -
  HUK68_RS00550 (HUK68_00550) - 118653..120113 (+) 1461 WP_175502435.1 sensor histidine kinase -
  HUK68_RS00555 (HUK68_00555) - 120127..121089 (-) 963 WP_175502436.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 39867.64 Da        Isoelectric Point: 5.3744

>NTDB_id=454831 HUK68_RS00535 WP_175502433.1 115847..116983(-) (recA) [Comamonas antarctica strain 16-35-5]
MDVTTVKGSNPATAANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYG
PESSGKTTLTLQVIAEMQKQGGQCAFVDAEHALDVQYAQKLGVQLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSV
AALTPKAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIR
RTGTIKKGDNAIGNETRVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVEAKILDKSGAWYAYRGEKIGQGRDNAR
EFLRENPDLAFEIENRVRESLGVSLLAGATPAPAAGGKPAKADKGADKAAAATAPAGE

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=454831 HUK68_RS00535 WP_175502433.1 115847..116983(-) (recA) [Comamonas antarctica strain 16-35-5]
ATGGACGTCACCACAGTCAAGGGCAGCAACCCCGCCACCGCAGCCAACAGCGAAAAAGCCAAGGCCCTGCAAGCCGCGCT
CGCGCAGATCGAAAAACAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAAGCCATCGAGGACATCCAGGTCG
TTTCCACCGGCTCGCTGGGCCTGGACATCGCCCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGC
CCGGAATCGTCGGGCAAGACCACGCTCACGCTGCAGGTCATTGCCGAAATGCAAAAGCAAGGCGGCCAGTGCGCGTTTGT
CGACGCCGAGCATGCGCTTGACGTGCAATATGCGCAGAAGCTGGGCGTGCAGCTATCCGACCTGCTGATCAGCCAGCCCG
ACACCGGCGAACAGGCGCTCGAGATCGTCGACAGCCTGGTGCGTTCGGGTGCCGTCGACCTGATCGTCATCGACTCGGTG
GCGGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCA
GGCGCTGCGCAAGCTCACCGCGACGATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCG
GCGTGATGTTCGGTTCGCCCGAAACCACCACCGGCGGCAATGCGCTCAAGTTCTATGCCTCCGTGCGCCTGGACATCCGC
CGCACCGGCACGATCAAGAAGGGCGACAACGCCATCGGCAACGAAACCCGCGTCAAGGTGGTCAAGAACAAGGTCAGCCC
GCCGTTCAAGACCGCTGAATTCGACATCCTGTTCGGCGAGGGCATCTCGCGCGAAGGCGAAATCATCGACATGGGCGTCG
AAGCCAAGATCCTCGACAAGTCGGGGGCCTGGTACGCCTACCGCGGCGAGAAGATCGGCCAGGGCCGCGACAACGCGCGC
GAATTCCTGCGCGAGAACCCGGACCTGGCGTTCGAGATCGAGAACCGCGTGCGCGAAAGCCTGGGCGTGTCCCTGCTGGC
CGGCGCCACCCCGGCTCCCGCCGCCGGCGGCAAGCCGGCCAAGGCCGACAAGGGCGCGGACAAGGCCGCAGCGGCCACTG
CACCCGCGGGCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N1X0A7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.645

90.212

0.728
  recA Pseudomonas stutzeri DSM 10701

71.733

87.037

0.624
  recA Neisseria gonorrhoeae MS11

70.606

87.302

0.616
  recA Neisseria gonorrhoeae strain FA1090

70.606

87.302

0.616
  recA Neisseria gonorrhoeae MS11

70.606

87.302

0.616
  recA Glaesserella parasuis strain SC1401

68.047

89.418

0.608
  recA Acinetobacter baylyi ADP1

70.245

86.243

0.606
  recA Acinetobacter baumannii D1279779

69.632

86.243

0.601
  recA Vibrio cholerae strain A1552

69.018

86.243

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.018

86.243

0.595
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.565

87.037

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.269

88.36

0.577
  recA Helicobacter pylori strain NCTC11637

64.545

87.302

0.563
  recA Helicobacter pylori 26695

64.545

87.302

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

86.508

0.561
  recA Latilactobacillus sakei subsp. sakei 23K

63.333

87.302

0.553
  recA Streptococcus mutans UA159

57.465

93.915

0.54
  recA Lactococcus lactis subsp. cremoris KW2

61.631

87.566

0.54
  recA Streptococcus mitis SK321

57.55

92.857

0.534
  recA Streptococcus pyogenes NZ131

60.486

87.037

0.526
  recA Streptococcus mitis NCTC 12261

59.517

87.566

0.521
  recA Streptococcus pneumoniae Rx1

59.215

87.566

0.519
  recA Streptococcus pneumoniae D39

59.215

87.566

0.519
  recA Streptococcus pneumoniae R6

59.215

87.566

0.519
  recA Streptococcus pneumoniae TIGR4

59.215

87.566

0.519
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

84.921

0.508