Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   JDY60_RS06470 Genome accession   NZ_CP066172
Coordinates   1355192..1357528 (-) Length   778 a.a.
NCBI ID   WP_200370407.1    Uniprot ID   -
Organism   Streptococcus oralis strain SF100     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1350192..1362528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JDY60_RS06450 (JDY60_06450) - 1350757..1351656 (-) 900 WP_045617636.1 TDT family transporter -
  JDY60_RS06455 (JDY60_06455) - 1351764..1352828 (-) 1065 WP_200370405.1 acyl-CoA dehydrogenase family protein -
  JDY60_RS06460 (JDY60_06460) - 1352843..1353391 (-) 549 WP_025171447.1 carboxymuconolactone decarboxylase family protein -
  JDY60_RS06465 (JDY60_06465) - 1353523..1354845 (-) 1323 WP_200370406.1 sodium:alanine symporter family protein -
  JDY60_RS06470 (JDY60_06470) mutS/mutS2 1355192..1357528 (-) 2337 WP_200370407.1 endonuclease MutS2 Machinery gene
  JDY60_RS06475 (JDY60_06475) - 1357629..1358177 (-) 549 WP_000623537.1 CvpA family protein -
  JDY60_RS06480 (JDY60_06480) zapA 1358174..1358476 (-) 303 WP_000002028.1 cell division protein ZapA -
  JDY60_RS06485 (JDY60_06485) rnhC 1358563..1359444 (+) 882 WP_200370410.1 ribonuclease HIII -
  JDY60_RS06490 (JDY60_06490) lepB 1359448..1360062 (+) 615 WP_001083994.1 signal peptidase I -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87637.59 Da        Isoelectric Point: 6.9041

>NTDB_id=453970 JDY60_RS06470 WP_200370407.1 1355192..1357528(-) (mutS/mutS2) [Streptococcus oralis strain SF100]
MNTKILETLEFNKIKALFEPHLLTEQGLEELKGLAPTAKVDKIKQAFTEMEEMQALFVEQPHFTILATREISAVCKRLEM
GADLNIEEFLLLKRVLLASRELQGFYTNLENVRLEQLARWFEKLHDFPHLQGSLQALNDAGFIENFASEELARIRRKIHD
SESQVRDVLQDLLKQKAQMLTEGIIASRNGRQVLPVKNTYRNKIAGVVHDISASGNTVYIEPREVVKLSEEIASLRADER
YEMIRILQELSERVRPHAAEIANDAWIIGHLDLIRAKVRFIQEMQAVVPQLSENQEIQLLHVRHPLVKNAVANDVHFGKE
LTAIVITGPNTGGKTIMLKTLGLTQLMAQSGLPILADKGSRVGIFEEIFADIGDEQSIEQSLSTFSSHMTNIVDILGKVN
QHSLLLLDELGAGTDPQEGAALAMAILEDLRLRQVKTMATTHYPELKAYGIETAFVQNASMEFDTASLRPTYRFMQGVPG
RSNAFEIAKRLGLSDVIVGDASQQVNQDNDVNRIIEQLEEQTLESRKRLDNIREVEQENLKMNRALKKLYNELNREKETE
LNKAREQAAEIVELALNESDQILKNLHSKSQLKPHEIIEAKSKLKKLAPEKVDLSKNKVLQKAKKKRAPKVGDDIVVLSY
GQRGTLTNQLKDGRWEAQVGLIKMTLEEKEFDLVQAQQEAPVKKKQVNVVKRASDRGPQARLDLRGKRYEEAMNELDAFI
DQALLNNMAQVDIIHGIGTGVIREGVTKYLQRNKHVKTFGYAPQNAGGSGATIVTFKG

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=453970 JDY60_RS06470 WP_200370407.1 1355192..1357528(-) (mutS/mutS2) [Streptococcus oralis strain SF100]
ATGAATACAAAAATACTAGAAACCTTAGAATTTAATAAAATCAAAGCCTTGTTTGAACCGCATCTCCTGACTGAGCAAGG
CTTAGAGGAGCTAAAAGGCTTGGCTCCAACTGCTAAGGTGGATAAGATCAAACAAGCCTTTACAGAGATGGAGGAAATGC
AAGCTCTATTTGTGGAACAACCTCACTTTACCATCCTAGCGACGCGTGAGATATCAGCTGTTTGCAAGCGTCTGGAGATG
GGGGCGGACCTCAATATTGAGGAGTTCCTGCTCCTCAAACGAGTCTTGCTGGCTAGCAGAGAGTTGCAAGGCTTTTATAC
CAATCTCGAAAACGTACGTTTGGAGCAGTTGGCGAGATGGTTTGAAAAACTACATGATTTTCCACACTTGCAAGGGAGTC
TTCAAGCTCTAAATGATGCAGGGTTTATCGAAAATTTCGCCAGTGAAGAGCTAGCACGTATCCGTCGGAAAATCCATGAT
AGCGAGAGTCAGGTCCGAGATGTCTTGCAAGACTTGCTCAAGCAAAAAGCGCAGATGTTGACGGAAGGCATAATTGCTAG
CAGAAATGGCCGTCAAGTCTTACCAGTCAAGAACACCTATCGCAATAAGATTGCAGGTGTTGTCCATGACATCTCTGCTA
GTGGAAACACGGTCTATATCGAGCCACGTGAAGTGGTCAAGCTGAGCGAAGAAATCGCTAGTTTGCGAGCAGACGAACGC
TATGAGATGATTCGCATCCTGCAGGAGCTCTCGGAACGGGTTCGTCCTCATGCTGCTGAGATTGCTAATGATGCTTGGAT
TATCGGCCATTTAGACTTGATTCGTGCCAAGGTGCGTTTTATTCAAGAAATGCAAGCGGTTGTTCCTCAACTTTCAGAGA
ATCAAGAGATTCAGCTTCTTCATGTTCGCCATCCTTTGGTCAAGAATGCTGTCGCAAATGATGTACACTTTGGTAAGGAA
TTAACGGCCATTGTCATTACAGGTCCCAATACTGGTGGGAAGACCATCATGCTCAAAACCCTAGGCTTGACTCAACTCAT
GGCCCAATCTGGTTTGCCCATTTTAGCTGATAAGGGGAGCCGTGTCGGTATTTTCGAAGAAATCTTTGCTGATATTGGCG
ATGAACAGTCTATTGAGCAGAGTTTGTCTACCTTCTCCAGCCACATGACCAATATCGTAGATATTCTTGGCAAGGTCAAT
CAGCACTCGCTCTTATTGCTAGATGAGCTCGGGGCTGGGACCGATCCGCAGGAAGGAGCAGCACTTGCTATGGCTATTCT
GGAGGATCTTCGTCTGCGTCAGGTCAAGACTATGGCGACGACCCACTATCCAGAACTCAAGGCTTATGGTATTGAGACAG
CCTTTGTGCAAAATGCCAGTATGGAGTTTGATACAGCCAGCCTGCGTCCGACCTATCGCTTTATGCAGGGAGTTCCTGGT
CGAAGCAATGCCTTTGAAATCGCCAAACGCCTAGGACTGTCAGATGTCATCGTCGGGGATGCCAGTCAGCAGGTCAATCA
AGATAATGATGTCAACCGTATCATTGAGCAATTGGAAGAGCAAACGCTTGAAAGCCGTAAACGCTTGGACAATATCCGTG
AGGTGGAGCAAGAAAACCTCAAGATGAACCGTGCACTCAAAAAACTCTACAACGAACTCAATCGTGAAAAAGAAACCGAG
CTTAACAAGGCGCGTGAACAAGCTGCCGAGATTGTGGAACTCGCTCTAAATGAGAGTGACCAGATTCTCAAGAACCTCCA
CAGTAAGTCTCAACTCAAACCCCACGAAATCATTGAAGCCAAGTCTAAACTGAAAAAACTAGCCCCTGAAAAAGTCGACT
TGTCTAAAAACAAGGTCCTTCAAAAGGCCAAGAAAAAACGAGCTCCGAAGGTGGGGGATGATATTGTGGTCCTCAGTTAT
GGACAACGTGGAACCTTGACCAATCAGCTTAAGGACGGCCGTTGGGAAGCCCAAGTCGGTTTGATCAAGATGACCTTGGA
AGAGAAAGAATTTGACCTTGTTCAGGCCCAGCAAGAAGCCCCAGTCAAGAAGAAACAAGTCAATGTCGTCAAACGTGCTT
CTGATCGTGGTCCGCAAGCGAGACTGGATCTTCGTGGAAAACGGTACGAAGAGGCCATGAATGAGCTGGACGCCTTTATT
GACCAAGCCCTGCTCAATAACATGGCGCAAGTCGACATCATCCATGGTATCGGAACAGGTGTCATCCGTGAAGGAGTCAC
CAAATACCTACAAAGAAACAAGCATGTTAAGACTTTCGGCTATGCTCCACAGAATGCTGGAGGCAGTGGCGCAACCATTG
TGACCTTTAAAGGATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(324-506)

Smr domain (Smr)

(702-777)

MutS2 and Smr-associated SH3 domain (MSSS)

(631-670)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

40.684

100

0.413