Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABLL_RS13755 Genome accession   NC_017192
Coordinates   2784724..2785773 (+) Length   349 a.a.
NCBI ID   WP_014475392.1    Uniprot ID   -
Organism   Arcobacter sp. L     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2779724..2790773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABLL_RS13725 (ABLL_2684) - 2779970..2781133 (-) 1164 WP_014475386.1 acylneuraminate cytidylyltransferase -
  ABLL_RS13730 (ABLL_2685) - 2781130..2781981 (-) 852 WP_014475387.1 class I SAM-dependent methyltransferase -
  ABLL_RS13735 (ABLL_2686) - 2781984..2782646 (-) 663 WP_014475388.1 TylF/MycF/NovP-related O-methyltransferase -
  ABLL_RS13740 (ABLL_2687) - 2782651..2783532 (-) 882 WP_014475389.1 N-acetylneuraminate synthase family protein -
  ABLL_RS14960 (ABLL_2688) - 2783536..2784285 (-) 750 WP_014475390.1 CBS domain-containing protein -
  ABLL_RS13750 (ABLL_2689) - 2784414..2784626 (+) 213 WP_014475391.1 hypothetical protein -
  ABLL_RS13755 (ABLL_2690) recA 2784724..2785773 (+) 1050 WP_014475392.1 recombinase RecA Machinery gene
  ABLL_RS13760 (ABLL_2691) eno 2785901..2787181 (+) 1281 WP_014475393.1 phosphopyruvate hydratase -
  ABLL_RS13765 (ABLL_2692) - 2787188..2787427 (+) 240 WP_041654936.1 septum formation initiator family protein -
  ABLL_RS13770 (ABLL_2693) - 2787424..2788170 (+) 747 WP_014475395.1 AMIN domain-containing protein -
  ABLL_RS13775 (ABLL_2694) - 2788144..2789304 (-) 1161 WP_014475396.1 cation:proton antiporter -
  ABLL_RS13780 (ABLL_2695) - 2789317..2790168 (-) 852 WP_014475397.1 biotin synthase -
  ABLL_RS13785 (ABLL_2696) - 2790158..2790670 (-) 513 WP_014475398.1 YfcE family phosphodiesterase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37543.88 Da        Isoelectric Point: 4.7309

>NTDB_id=45372 ABLL_RS13755 WP_014475392.1 2784724..2785773(+) (recA) [Arcobacter sp. L]
MDENQKKSLELAIKQIDKTFGKGTLIRLGDKVVVPTETISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVIDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLNKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLKDNPEIAREIE
NKILESMGVNDSIISSSSDDLDDTADLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=45372 ABLL_RS13755 WP_014475392.1 2784724..2785773(+) (recA) [Arcobacter sp. L]
ATGGATGAGAATCAAAAAAAATCATTAGAATTAGCTATCAAACAAATTGATAAAACATTTGGAAAAGGTACACTTATTAG
ACTTGGTGATAAAGTTGTTGTTCCAACTGAAACAATCAGCACAGGTTCTTTAGGACTTGATTTAGCACTTGGTGTTGGTG
GACTTCCAAAAGGAAGAGTTATTGAAATTTATGGGCCAGAAAGTTCAGGAAAAACAACACTAACATTACATGCAATTGCT
GAAGCACAAAAAGCAGGAGGTGTTTGTGCATTTATTGATGCTGAACATGCTCTTGATGTTAAATATGCAAAAGATATTGG
TGTTGATACAGATAACTTACTTGTATCTCAACCAGATTTTGGAGAACAAGCTTTAGAAATACTTGAAACCGTAATAAGAA
GTGGTGCAGTTGATTTAGTTGTTATTGACTCTGTTGCAGCACTTACTCCAAAAGTAGAAATTGATGGAGATATGGATGAT
CAACAAGTTGGTGTTCAAGCAAGACTTATGAGTAAAGCTTTAAGAAAAGTAACTGGTTTATTAAATAAAATGAATTGTAC
AGTTATTTTTATCAACCAAATAAGAATGAAAATTGGAATGACTGGATATGGGAGTCCTGAAACAACAACTGGAGGGAATG
CTCTTAAATTCTACTCTTCAGTAAGACTTGATATTAGAAGAATTGCTACACTTAAACAAGGTGAAAATTCTATTGGGAAT
AGAGTAAAAGTAAAAGTTGTTAAAAATAAAGTGGCAGCTCCTTTTAAACAAGCAGAATTTGATATTATGTTTGGAGAAGG
TATCTCAAAAACTGGTGAATTAGTTGATTATGGGGTAAAACTTGATATCGTAGATAAAGCTGGTGCTTGGTTTAGTTATG
GTGATTCAAAAATTGGACAAGGAAGAGAAAACTCAAAAGTATTCTTAAAAGATAACCCTGAAATAGCACGTGAAATTGAA
AATAAAATCCTTGAATCTATGGGAGTTAATGATTCAATCATTAGTAGTAGTTCAGATGATTTAGATGATACAGCTGATTT
AGACGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.471

97.421

0.745
  recA Helicobacter pylori 26695

74.344

98.281

0.731
  recA Helicobacter pylori strain NCTC11637

74.344

98.281

0.731
  recA Acinetobacter baylyi ADP1

62.248

99.427

0.619
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

95.415

0.613
  recA Acinetobacter baumannii D1279779

65.138

93.696

0.61
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Neisseria gonorrhoeae strain FA1090

62.099

98.281

0.61
  recA Neisseria gonorrhoeae MS11

62.099

98.281

0.61
  recA Vibrio cholerae strain A1552

60.58

98.854

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.58

98.854

0.599
  recA Pseudomonas stutzeri DSM 10701

60.057

99.713

0.599
  recA Ralstonia pseudosolanacearum GMI1000

65.397

90.258

0.59
  recA Glaesserella parasuis strain SC1401

58.908

99.713

0.587
  recA Streptococcus pyogenes NZ131

56.303

100

0.576
  recA Streptococcus mutans UA159

56.091

100

0.567
  recA Bacillus subtilis subsp. subtilis str. 168

60.182

94.269

0.567
  recA Streptococcus mitis SK321

56.609

99.713

0.564
  recA Latilactobacillus sakei subsp. sakei 23K

56.812

98.854

0.562
  recA Streptococcus pneumoniae R6

57.522

97.135

0.559
  recA Streptococcus pneumoniae Rx1

57.522

97.135

0.559
  recA Streptococcus pneumoniae D39

57.522

97.135

0.559
  recA Streptococcus pneumoniae TIGR4

57.522

97.135

0.559
  recA Streptococcus mitis NCTC 12261

58.61

94.842

0.556
  recA Lactococcus lactis subsp. cremoris KW2

58.055

94.269

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

93.41

0.53

Multiple sequence alignment