Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HTY51_RS16950 Genome accession   NZ_CP054424
Coordinates   3494473..3495528 (+) Length   351 a.a.
NCBI ID   WP_174253829.1    Uniprot ID   A0A6N0BW57
Organism   Rhodoferax sp. BAB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3489473..3500528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTY51_RS16920 (HTY51_16920) - 3489622..3490155 (+) 534 WP_254606917.1 SET domain-containing protein -
  HTY51_RS16925 (HTY51_16925) - 3490167..3490925 (+) 759 WP_174253824.1 biotin--[acetyl-CoA-carboxylase] ligase -
  HTY51_RS16930 (HTY51_16930) - 3490940..3491599 (+) 660 WP_174253825.1 SPOR domain-containing protein -
  HTY51_RS16935 (HTY51_16935) - 3491621..3493060 (-) 1440 WP_174253826.1 sensor histidine kinase -
  HTY51_RS16940 (HTY51_16940) - 3493119..3493790 (-) 672 WP_174253827.1 response regulator transcription factor -
  HTY51_RS16945 (HTY51_16945) - 3493856..3494341 (-) 486 WP_174253828.1 MarR family winged helix-turn-helix transcriptional regulator -
  HTY51_RS16950 (HTY51_16950) recA 3494473..3495528 (+) 1056 WP_174253829.1 recombinase RecA Machinery gene
  HTY51_RS16955 (HTY51_16955) recX 3495552..3496022 (+) 471 WP_254606918.1 recombination regulator RecX -
  HTY51_RS16960 (HTY51_16960) argC 3496023..3496955 (-) 933 WP_174253830.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  HTY51_RS16965 (HTY51_16965) sucC 3497117..3498286 (+) 1170 WP_174253831.1 ADP-forming succinate--CoA ligase subunit beta -
  HTY51_RS16970 (HTY51_16970) sucD 3498298..3499191 (+) 894 WP_174253832.1 succinate--CoA ligase subunit alpha -
  HTY51_RS16975 (HTY51_16975) - 3499343..3500044 (+) 702 WP_174253833.1 TerC family protein -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 37455.03 Da        Isoelectric Point: 4.8819

>NTDB_id=452440 HTY51_RS16950 WP_174253829.1 3494473..3495528(+) (recA) [Rhodoferax sp. BAB1]
MDVSGKSISVANSEKAKALAAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDIALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKIGGTCAFVDAEHALDVQYAQKLGVNLPDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALT
PKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRIDIRRTGT
IKKGDDAIGNETKVKIVKNKVAPPFKTAEFDILFGEGISREGEIIDMGVNAKIIEKSGAWYAYNGEKIGQGRDNAREFLR
ENAELAHEIENKVRESLGIPLLNEAAEAVAE

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=452440 HTY51_RS16950 WP_174253829.1 3494473..3495528(+) (recA) [Rhodoferax sp. BAB1]
ATGGACGTATCCGGCAAATCCATCAGCGTCGCCAACAGTGAAAAAGCCAAGGCCCTGGCGGCCGCGCTGGCCCAGATCGA
GAAGCAGTTCGGCAAGGGCACCATCATGCGTCTGGGCGAGGGCGAGGCGATCGAGGACATCCAGGTCGTCTCCACCGGCT
CCTTGGGGCTGGACATTGCCCTGGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCTGAATCGTCG
GGCAAGACCACGCTGACCTTGCAGGTCATCGCCGAGATGCAGAAGATCGGCGGCACCTGCGCCTTCGTTGACGCCGAGCA
CGCCCTGGATGTGCAGTACGCGCAGAAACTGGGCGTCAACCTGCCCGACCTGCTGATCTCCCAGCCGGACACCGGCGAGC
AGGCGCTCGAGATCGTCGACAGCCTGGTGCGCTCCGGTGCCGTGGACTTGATCGTGATCGACTCGGTGGCGGCGCTGACG
CCCAAGGCCGAAATCGAAGGCGAGATGGGCGATTCCCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCCCTGCGCAA
GCTGACCGCTACCATCAAGAAGACCAATTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GCAGCCCCGAGACCACCACCGGCGGCAATGCGCTCAAGTTCTACGCCTCGGTGCGCATCGACATCCGCCGCACCGGCACC
ATCAAGAAGGGCGATGACGCCATTGGCAACGAGACCAAGGTCAAGATCGTCAAGAACAAGGTGGCGCCCCCCTTCAAGAC
GGCCGAGTTCGACATCCTGTTCGGCGAGGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTCAACGCCAAGATCA
TCGAGAAGTCCGGCGCCTGGTATGCCTACAACGGCGAGAAAATCGGGCAGGGCCGCGACAACGCGCGCGAGTTCCTGCGC
GAGAACGCAGAGCTGGCGCACGAGATCGAGAACAAGGTGCGCGAGTCCCTGGGCATTCCGCTGCTCAACGAGGCCGCGGA
GGCCGTCGCCGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0BW57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.284

95.442

0.795
  recA Pseudomonas stutzeri DSM 10701

70.882

96.866

0.687
  recA Neisseria gonorrhoeae MS11

71.212

94.017

0.67
  recA Neisseria gonorrhoeae MS11

71.212

94.017

0.67
  recA Neisseria gonorrhoeae strain FA1090

71.212

94.017

0.67
  recA Vibrio cholerae strain A1552

70.213

93.732

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.213

93.732

0.658
  recA Glaesserella parasuis strain SC1401

70.988

92.308

0.655
  recA Acinetobacter baylyi ADP1

70.245

92.877

0.652
  recA Acinetobacter baumannii D1279779

69.939

92.877

0.65
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.976

94.302

0.641
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.869

93.732

0.627
  recA Helicobacter pylori 26695

63.743

97.436

0.621
  recA Helicobacter pylori strain NCTC11637

63.743

97.436

0.621
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

93.162

0.601
  recA Latilactobacillus sakei subsp. sakei 23K

63.03

94.017

0.593
  recA Lactococcus lactis subsp. cremoris KW2

62.236

94.302

0.587
  recA Streptococcus mitis SK321

60

96.866

0.581
  recA Streptococcus mitis NCTC 12261

59.706

96.866

0.578
  recA Streptococcus pyogenes NZ131

61.702

93.732

0.578
  recA Streptococcus mutans UA159

61.515

94.017

0.578
  recA Streptococcus pneumoniae R6

60.423

94.302

0.57
  recA Streptococcus pneumoniae TIGR4

60.423

94.302

0.57
  recA Streptococcus pneumoniae D39

60.423

94.302

0.57
  recA Streptococcus pneumoniae Rx1

60.423

94.302

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

91.453

0.561