Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HTZ88_RS02855 Genome accession   NZ_CP054418
Coordinates   524401..525543 (+) Length   380 a.a.
NCBI ID   WP_014974002.1    Uniprot ID   K0D677
Organism   Leuconostoc carnosum strain 4010     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 519401..530543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HTZ88_RS02835 (HTZ88_02815) - 520246..521508 (+) 1263 WP_014973998.1 pitrilysin family protein -
  HTZ88_RS02840 (HTZ88_02820) - 521510..522781 (+) 1272 WP_014973999.1 pitrilysin family protein -
  HTZ88_RS02845 (HTZ88_02825) - 522795..523676 (+) 882 WP_014974000.1 RodZ family helix-turn-helix domain-containing protein -
  HTZ88_RS02850 (HTZ88_02830) pgsA 523687..524268 (+) 582 WP_014974001.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HTZ88_RS02855 (HTZ88_02835) recA 524401..525543 (+) 1143 WP_014974002.1 recombinase RecA Machinery gene
  HTZ88_RS02860 (HTZ88_02840) - 525655..526347 (+) 693 WP_014974003.1 response regulator transcription factor -
  HTZ88_RS02865 (HTZ88_02845) - 526523..527437 (+) 915 WP_014974004.1 phosphate ABC transporter substrate-binding protein -
  HTZ88_RS02870 (HTZ88_02850) - 527507..528862 (+) 1356 WP_135197245.1 cell wall metabolism sensor histidine kinase WalK -
  HTZ88_RS02875 (HTZ88_02855) - 528960..529841 (+) 882 WP_014974007.1 phosphate ABC transporter substrate-binding protein PstS family protein -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40874.31 Da        Isoelectric Point: 4.6746

>NTDB_id=452407 HTZ88_RS02855 WP_014974002.1 524401..525543(+) (recA) [Leuconostoc carnosum strain 4010]
MVTKKTTKKEDKENQAKGRKAALDEALKKIEKNFGKGSVMLLGENATTQVDTYPSGSVKLDVALGVGGYPKGRIIEIYGP
ESSGKTTLALHAVAEVQKAGGTAAYIDAENALDVKYAEALGIHKDELLLSQPDTGEQGLEIADALVQSGAVDIIVIDSVA
ALVPRAEIEGEMGDAHVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTIRLEVRR
STQIKDGTDVTGNLTKVKVVKNKVAPPFKVAEVDIMYGKGISQTGEILDLGADTEIIRKAGAFYYYDDVKIGQGREKAKE
FLDSPENAEMRQEIYAKVRDIFGIGDGSTTEVAPETEESVDEPDTLDLGNNDDLTDEPIV

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=452407 HTZ88_RS02855 WP_014974002.1 524401..525543(+) (recA) [Leuconostoc carnosum strain 4010]
ATGGTAACGAAAAAAACGACTAAAAAAGAAGACAAAGAAAACCAAGCTAAGGGTCGCAAAGCAGCACTTGATGAGGCACT
GAAGAAAATCGAAAAAAACTTTGGGAAAGGGTCTGTGATGTTGTTGGGTGAAAACGCAACAACGCAAGTGGACACTTACC
CATCAGGATCAGTTAAATTAGATGTTGCACTTGGTGTTGGTGGTTATCCAAAGGGTCGTATTATTGAGATATATGGACCA
GAATCATCAGGTAAAACGACACTGGCATTGCATGCTGTCGCTGAAGTACAAAAAGCTGGTGGCACAGCAGCGTATATTGA
TGCTGAAAACGCTTTAGATGTTAAATATGCTGAAGCATTGGGCATTCATAAAGATGAATTATTGTTATCACAGCCAGATA
CTGGTGAACAAGGATTGGAAATTGCCGATGCTTTGGTACAATCTGGAGCAGTTGATATTATCGTTATTGATTCAGTTGCA
GCATTGGTGCCTAGGGCTGAAATTGAAGGCGAGATGGGTGATGCCCATGTCGGATTACAAGCTCGTTTAATGAGTCAAGC
GTTACGTAAATTAGCCGGTACATTAAATCGTACAGGAACGATTGCTATCTTTATTAACCAAATCCGTGAAAAGATTGGGG
TGATGTTTGGTAATCCTGAAACAACACCTGGTGGTCGTGCGCTAAAGTTTTATTCAACGATTCGTTTAGAAGTACGTCGA
TCAACACAAATTAAAGATGGTACAGATGTTACAGGAAACTTAACTAAGGTCAAAGTTGTTAAAAATAAGGTAGCACCACC
ATTTAAAGTTGCTGAAGTCGATATTATGTACGGAAAAGGAATTTCACAAACTGGGGAAATTCTTGATTTAGGTGCTGATA
CAGAAATTATCCGTAAAGCTGGGGCATTCTACTATTATGATGATGTCAAAATAGGGCAAGGACGTGAAAAGGCGAAGGAA
TTTTTGGATAGTCCTGAAAATGCCGAGATGCGTCAAGAAATTTATGCTAAAGTACGTGATATTTTTGGTATCGGTGATGG
TAGTACAACTGAAGTCGCACCAGAAACAGAAGAATCAGTGGATGAACCAGATACATTGGATTTGGGGAATAATGATGATT
TGACTGACGAACCAATTGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0D677

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

74.695

86.316

0.645
  recA Streptococcus mitis NCTC 12261

65.278

94.737

0.618
  recA Streptococcus mitis SK321

65.278

94.737

0.618
  recA Streptococcus pneumoniae D39

64.011

95.789

0.613
  recA Streptococcus pneumoniae Rx1

64.011

95.789

0.613
  recA Streptococcus pneumoniae R6

64.011

95.789

0.613
  recA Streptococcus pneumoniae TIGR4

64.011

95.789

0.613
  recA Streptococcus mutans UA159

62.772

96.842

0.608
  recA Streptococcus pyogenes NZ131

63.636

95.526

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

69.632

85.789

0.597
  recA Lactococcus lactis subsp. cremoris KW2

64.023

92.895

0.595
  recA Ralstonia pseudosolanacearum GMI1000

63.83

86.579

0.553
  recA Acinetobacter baumannii D1279779

57.91

93.158

0.539
  recA Acinetobacter baylyi ADP1

58.166

91.842

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.763

88.947

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.976

86.316

0.526
  recA Glaesserella parasuis strain SC1401

54.396

95.789

0.521
  recA Pseudomonas stutzeri DSM 10701

57.434

90.263

0.518
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.327

86.053

0.511
  recA Neisseria gonorrhoeae MS11

60.252

83.421

0.503
  recA Neisseria gonorrhoeae strain FA1090

60.252

83.421

0.503
  recA Neisseria gonorrhoeae MS11

60.252

83.421

0.503
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.642

85.263

0.5
  recA Vibrio cholerae strain A1552

58.642

85.263

0.5
  recA Helicobacter pylori strain NCTC11637

54.783

90.789

0.497
  recA Helicobacter pylori 26695

54.783

90.789

0.497