Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PMPD1_RS17420 Genome accession   NZ_CP054212
Coordinates   3602747..3603811 (-) Length   354 a.a.
NCBI ID   WP_173635224.1    Uniprot ID   A0A6M8UC16
Organism   Paramixta manurensis strain PD-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597747..3608811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PMPD1_RS17405 (PMPD1_3436) csrA 3598904..3599089 (-) 186 WP_013574027.1 carbon storage regulator CsrA -
  PMPD1_RS17410 (PMPD1_3437) alaS 3599334..3601961 (-) 2628 WP_173635222.1 alanine--tRNA ligase -
  PMPD1_RS17415 (PMPD1_3438) - 3602102..3602611 (-) 510 WP_173635223.1 regulatory protein RecX -
  PMPD1_RS17420 (PMPD1_3439) recA 3602747..3603811 (-) 1065 WP_173635224.1 recombinase RecA Machinery gene
  PMPD1_RS17425 (PMPD1_3440) pncC 3603909..3604403 (-) 495 WP_173635225.1 nicotinamide-nucleotide amidase -
  PMPD1_RS17430 (PMPD1_3441) tam 3604587..3605357 (-) 771 WP_173635226.1 trans-aconitate 2-methyltransferase -
  PMPD1_RS17435 (PMPD1_3442) - 3605416..3605757 (-) 342 WP_173635227.1 zinc ribbon domain-containing protein YjdM -
  PMPD1_RS17440 (PMPD1_3443) mltB 3605873..3606943 (-) 1071 WP_173635228.1 lytic murein transglycosylase B -
  PMPD1_RS17445 (PMPD1_3444) - 3607074..3607544 (-) 471 WP_173635229.1 hypothetical protein -
  PMPD1_RS17450 (PMPD1_3445) - 3607531..3608358 (-) 828 WP_173635230.1 winged helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37903.28 Da        Isoelectric Point: 4.8643

>NTDB_id=451461 PMPD1_RS17420 WP_173635224.1 3602747..3603811(-) (recA) [Paramixta manurensis strain PD-1]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQRKGKTCAFIDAEHALDPVYAKKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAIKEGDNVVG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINVYGELVDLGVKHKLIEKAGAWYSYNGDKIGQGKANAGNYLKENAAIANEL
ESKLRDMLLNNPTEGADFSVDENEVAASETQEDF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=451461 PMPD1_RS17420 WP_173635224.1 3602747..3603811(-) (recA) [Paramixta manurensis strain PD-1]
ATGGCTATTGACGAAAATAAACAGAAAGCTTTGGCTGCGGCGCTGGGGCAGATTGAGAAGCAATTTGGCAAAGGCTCCAT
CATGCGCCTGGGCGAAGACCGTTCGATGGATGTTGAAACCATTTCAACCGGTTCGCTTTCGCTGGATATCGCGCTAGGCG
CCGGCGGGTTGCCGATGGGGCGTATCGTCGAAATTTATGGTCCTGAGTCTTCCGGTAAAACCACGCTGACGCTTCAGGTA
ATTGCCGCCGCGCAGCGCAAGGGGAAAACTTGTGCGTTTATTGATGCTGAGCATGCGCTGGATCCGGTCTATGCGAAAAA
ACTGGGCGTAGATATTGATAATCTGCTGTGTTCACAGCCGGATACCGGTGAGCAAGCGCTAGAGATTTGTGATGCGCTGG
CGCGTTCCGGCGCGGTGGATGTCATTATTGTCGACTCCGTAGCGGCGCTGACGCCAAAAGCGGAAATTGAAGGCGAAATC
GGTGATTCGCACATGGGCCTGGCGGCACGTATGATGAGCCAGGCGATGCGTAAACTGGCGGGTAACCTGAAACAATCTAA
TACGCTGCTGATTTTCATTAACCAAATTCGTATGAAGATTGGCGTAATGTTTGGCAACCCGGAAACGACCACCGGTGGTA
ATGCGCTGAAGTTCTATGCGTCGGTTCGCCTGGATATCCGTCGTATTGGCGCGATTAAAGAAGGCGACAACGTGGTGGGC
AGTGAAACGCGTGTCAAAGTGGTGAAAAACAAAGTAGCCGCGCCGTTTAAGCAAGCTGAATTCCAGATCATGTATGGTGA
AGGCATTAACGTCTATGGTGAGCTGGTAGACTTGGGCGTGAAGCATAAGCTGATTGAGAAAGCGGGCGCCTGGTATAGCT
ATAACGGCGATAAAATTGGGCAGGGTAAAGCGAATGCCGGTAATTACCTGAAAGAGAATGCGGCGATTGCCAACGAGCTT
GAAAGCAAACTGCGCGATATGTTGCTCAATAACCCGACCGAAGGGGCTGATTTCTCGGTTGACGAGAATGAAGTCGCGGC
CAGCGAGACGCAAGAAGACTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M8UC16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

86.28

92.655

0.799
  recA Vibrio cholerae O1 biovar El Tor strain E7946

86.28

92.655

0.799
  recA Pseudomonas stutzeri DSM 10701

75.535

92.373

0.698
  recA Acinetobacter baumannii D1279779

72.222

96.61

0.698
  recA Acinetobacter baylyi ADP1

71.988

93.785

0.675
  recA Glaesserella parasuis strain SC1401

72.561

92.655

0.672
  recA Neisseria gonorrhoeae MS11

68.519

91.525

0.627
  recA Neisseria gonorrhoeae MS11

68.519

91.525

0.627
  recA Neisseria gonorrhoeae strain FA1090

68.519

91.525

0.627
  recA Ralstonia pseudosolanacearum GMI1000

69.841

88.983

0.621
  recA Helicobacter pylori strain NCTC11637

62.048

93.785

0.582
  recA Helicobacter pylori 26695

61.747

93.785

0.579
  recA Lactococcus lactis subsp. cremoris KW2

62.848

91.243

0.573
  recA Streptococcus mitis NCTC 12261

62.539

91.243

0.571
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

90.678

0.568
  recA Streptococcus pneumoniae Rx1

62.229

91.243

0.568
  recA Streptococcus pneumoniae R6

62.229

91.243

0.568
  recA Streptococcus pneumoniae TIGR4

62.229

91.243

0.568
  recA Streptococcus mitis SK321

62.229

91.243

0.568
  recA Streptococcus pneumoniae D39

62.229

91.243

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

61.846

91.808

0.568
  recA Streptococcus pyogenes NZ131

61.846

91.808

0.568
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.162

92.373

0.565
  recA Streptococcus mutans UA159

61.538

91.808

0.565
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.94

93.785

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.816

92.09

0.551