Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ABED_RS10545 Genome accession   NC_017187
Coordinates   2137416..2138465 (-) Length   349 a.a.
NCBI ID   WP_014469498.1    Uniprot ID   -
Organism   Aliarcobacter butzleri ED-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2132416..2143465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABED_RS10520 (ABED_2046) - 2133687..2134199 (+) 513 WP_014469494.1 YfcE family phosphodiesterase -
  ABED_RS10525 (ABED_2047) - 2134189..2135037 (+) 849 WP_004511125.1 biotin synthase -
  ABED_RS10530 (ABED_2048) - 2135060..2135770 (-) 711 WP_014469495.1 AMIN domain-containing protein -
  ABED_RS10535 - 2135767..2136012 (-) 246 WP_004511127.1 FtsB family cell division protein -
  ABED_RS10540 (ABED_2050) eno 2136016..2137296 (-) 1281 WP_014469497.1 phosphopyruvate hydratase -
  ABED_RS10545 (ABED_2051) recA 2137416..2138465 (-) 1050 WP_014469498.1 recombinase RecA Machinery gene
  ABED_RS10550 (ABED_2052) - 2138566..2138760 (-) 195 WP_004511130.1 hypothetical protein -
  ABED_RS10555 (ABED_2053) pseB 2138885..2139877 (+) 993 WP_014469499.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ABED_RS10560 (ABED_2054) pseC 2139874..2141004 (+) 1131 WP_014469500.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ABED_RS10565 (ABED_2055) pseF 2140997..2141695 (+) 699 WP_014469501.1 pseudaminic acid cytidylyltransferase -
  ABED_RS10570 (ABED_2056) pseI 2141692..2142717 (+) 1026 WP_014469502.1 pseudaminic acid synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37480.82 Da        Isoelectric Point: 4.6898

>NTDB_id=45141 ABED_RS10545 WP_014469498.1 2137416..2138465(-) (recA) [Aliarcobacter butzleri ED-1]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPVETISTGSLGLDLALGVGGLPRGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKEIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIVDKAGAWFSYGDSKIGQGRENSKVFLKDNPEVAREIE
NKILESMGVNDELITSGADDSDDIAGLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=45141 ABED_RS10545 WP_014469498.1 2137416..2138465(-) (recA) [Aliarcobacter butzleri ED-1]
ATGGATGAAAATCAAAAAAAATCGTTAGAGCTAGCTATAAAACAAATAGATAAAGCTTTTGGTAAAGGTACTTTAATTAG
ACTTGGAGATAAAGAAGTTATTCCTGTTGAAACTATTAGTACTGGTTCTTTAGGTCTTGATTTAGCTTTAGGTGTTGGAG
GACTTCCAAGAGGAAGAGTTATTGAAATTTATGGACCTGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGCGCATTTATAGATGCTGAACATGCGCTTGATGTAAAATATGCAAAAGAAATAGG
AGTTGATACAGATAATTTACTTGTTTCTCAACCAGATTTTGGAGAACAAGCTTTAGAAATACTTGAAACTGTTATTAGAA
GTGGAGCTGTTGATTTAGTAGTTGTAGATTCAGTTGCTGCACTTACTCCAAAAGTAGAAATCGATGGAGATATGGACGAC
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGTAAAGCATTAAGAAAAGTAACTGGACTTTTAAGTAAAATGAATTGTAC
GGTTATTTTTATTAACCAAATAAGAATGAAAATTGGTATGACAGGATATGGAAGTCCTGAAACTACTACTGGTGGAAATG
CACTTAAATTCTACTCTTCAGTTAGACTTGATATTAGAAGAATTGCAACTTTAAAGCAAGGTGAAAATTCTATTGGAAAT
AGAGTTAAAGTAAAAGTTGTAAAAAATAAAGTTGCAGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTCGGAGAAGG
TATTTCAAAAACTGGTGAACTTGTTGATTATGGTGTAAAACTTGATATTGTTGATAAAGCAGGAGCTTGGTTTAGTTATG
GAGATTCAAAAATTGGGCAAGGTAGAGAAAACTCTAAAGTATTCTTAAAAGATAATCCAGAAGTTGCACGTGAGATTGAA
AATAAAATCTTAGAATCTATGGGTGTAAATGATGAACTTATAACAAGTGGAGCTGATGATAGCGATGATATAGCTGGTTT
AGATGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.439

97.994

0.739
  recA Helicobacter pylori 26695

76.048

95.702

0.728
  recA Helicobacter pylori strain NCTC11637

76.048

95.702

0.728
  recA Neisseria gonorrhoeae MS11

62.791

98.567

0.619
  recA Neisseria gonorrhoeae strain FA1090

62.791

98.567

0.619
  recA Neisseria gonorrhoeae MS11

62.791

98.567

0.619
  recA Acinetobacter baumannii D1279779

63.717

97.135

0.619
  recA Acinetobacter baylyi ADP1

62.391

98.281

0.613
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.264

95.415

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.694

99.14

0.602
  recA Vibrio cholerae strain A1552

60.694

99.14

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.032

90.258

0.596
  recA Glaesserella parasuis strain SC1401

60.234

97.994

0.59
  recA Pseudomonas stutzeri DSM 10701

59.71

98.854

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

60.366

93.983

0.567
  recA Streptococcus mitis NCTC 12261

57.143

98.281

0.562
  recA Latilactobacillus sakei subsp. sakei 23K

58.788

94.556

0.556
  recA Streptococcus mitis SK321

58.61

94.842

0.556
  recA Streptococcus pyogenes NZ131

58.485

94.556

0.553
  recA Streptococcus mutans UA159

57.784

95.702

0.553
  recA Streptococcus pneumoniae D39

58.006

94.842

0.55
  recA Streptococcus pneumoniae TIGR4

58.006

94.842

0.55
  recA Streptococcus pneumoniae R6

58.006

94.842

0.55
  recA Streptococcus pneumoniae Rx1

58.006

94.842

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.576

94.556

0.544
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.282

93.41

0.544

Multiple sequence alignment