Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HQN62_RS02370 Genome accession   NZ_CP054141
Coordinates   567721..568740 (-) Length   339 a.a.
NCBI ID   WP_116796576.1    Uniprot ID   A0A2U0TQF4
Organism   Flavobacterium sp. M31R6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562721..573740
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQN62_RS02345 (HQN62_02345) - 563760..564569 (-) 810 WP_173503173.1 DUF1338 domain-containing protein -
  HQN62_RS02350 (HQN62_02350) - 564759..565232 (+) 474 WP_116796579.1 Lrp/AsnC family transcriptional regulator -
  HQN62_RS02355 (HQN62_02355) - 565317..565778 (-) 462 WP_173503174.1 hypothetical protein -
  HQN62_RS02360 (HQN62_02360) trpS 565840..566814 (-) 975 WP_173503175.1 tryptophan--tRNA ligase -
  HQN62_RS02365 (HQN62_02365) - 566918..567685 (+) 768 WP_116798431.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  HQN62_RS02370 (HQN62_02370) recA 567721..568740 (-) 1020 WP_116796576.1 recombinase RecA Machinery gene
  HQN62_RS02375 (HQN62_02375) - 569125..570789 (-) 1665 WP_173503176.1 hypothetical protein -
  HQN62_RS02380 (HQN62_02380) - 570814..571596 (-) 783 WP_173503177.1 enoyl-CoA hydratase/isomerase family protein -
  HQN62_RS02385 (HQN62_02385) - 571607..573022 (-) 1416 WP_173503178.1 HAMP domain-containing sensor histidine kinase -
  HQN62_RS02390 (HQN62_02390) - 573082..573636 (-) 555 WP_173503179.1 CopD family protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36738.15 Da        Isoelectric Point: 5.8504

>NTDB_id=451088 HQN62_RS02370 WP_116796576.1 567721..568740(-) (recA) [Flavobacterium sp. M31R6]
MKEKSSSEKEAKLKALQLTLDKLDKTYGKGTVMKMGDKAIEEVETISSGSLGIDLALGVGGYPKGRIIEIYGPESSGKTT
LTLHAIAEAQKAGGIAAFIDAEHAFDRNYAEKLGVDIENLIISQPDNGEQALEIAENLIRSGAIDIVVIDSVAALTPKSE
IEGEMGDSKMGLHARLMSQALRKLTGTISKTNCTVFFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDG
ENVLGNRTKVKVVKNKVAPPFKTAEFDIMYGEGISKTGEILDLAVEFEIIKKAGSWFSYGDTKLGQGRDAVKTLIKDNPE
LADELEVKIKSHIKELAEA

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=451088 HQN62_RS02370 WP_116796576.1 567721..568740(-) (recA) [Flavobacterium sp. M31R6]
ATGAAAGAAAAAAGCAGTTCAGAGAAAGAAGCTAAGTTGAAAGCGTTACAGCTTACACTTGACAAATTAGACAAAACCTA
CGGAAAAGGAACTGTAATGAAAATGGGCGACAAAGCCATAGAGGAAGTGGAAACGATTTCATCTGGATCTTTGGGAATCG
ATTTGGCTTTGGGAGTTGGTGGTTATCCAAAAGGAAGAATTATAGAAATATACGGGCCGGAATCGTCTGGTAAAACGACT
TTGACACTTCATGCAATTGCAGAAGCTCAAAAAGCGGGAGGAATTGCTGCTTTTATTGATGCTGAGCATGCTTTTGATAG
AAATTATGCTGAGAAATTAGGAGTTGATATCGAAAACCTAATCATTTCGCAACCGGATAACGGGGAGCAAGCACTTGAAA
TTGCCGAAAACCTGATTCGTTCAGGAGCGATTGACATTGTGGTTATTGACTCGGTTGCTGCATTGACGCCTAAAAGCGAA
ATTGAAGGTGAAATGGGAGATTCAAAAATGGGTCTCCATGCTCGTTTGATGTCTCAAGCATTGAGAAAATTAACGGGAAC
GATCAGTAAAACGAATTGTACGGTGTTTTTCATCAACCAGTTGAGAGAGAAAATCGGGGTTATGTTTGGAAATCCAGAAA
CCACTACAGGTGGTAATGCCTTGAAGTTTTACGCTTCGGTACGTTTGGATATTCGTCGTTCTACACAAATTAAAGACGGT
GAAAACGTTTTGGGTAACAGAACTAAAGTAAAAGTGGTTAAAAACAAAGTGGCACCACCATTTAAAACAGCTGAATTTGA
CATCATGTATGGTGAAGGAATCTCGAAAACAGGTGAGATACTAGACCTTGCCGTAGAATTTGAAATTATCAAAAAAGCGG
GTTCTTGGTTCAGTTATGGTGATACCAAACTAGGACAAGGCCGTGATGCCGTTAAAACATTAATCAAGGACAATCCGGAA
TTGGCCGATGAACTAGAAGTGAAAATTAAAAGTCACATCAAGGAATTAGCCGAAGCATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U0TQF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

76.765

100

0.77
  recA Helicobacter pylori 26695

65.231

95.87

0.625
  recA Helicobacter pylori strain NCTC11637

65.231

95.87

0.625
  recA Neisseria gonorrhoeae MS11

65.732

94.69

0.622
  recA Neisseria gonorrhoeae MS11

65.732

94.69

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.732

94.69

0.622
  recA Acinetobacter baumannii D1279779

65.123

95.575

0.622
  recA Glaesserella parasuis strain SC1401

64.417

96.165

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.706

95.28

0.617
  recA Acinetobacter baylyi ADP1

64.596

94.985

0.614
  recA Ralstonia pseudosolanacearum GMI1000

66.559

91.74

0.611
  recA Streptococcus mitis NCTC 12261

61.677

98.525

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

64.78

93.805

0.608
  recA Streptococcus mitis SK321

61.377

98.525

0.605
  recA Streptococcus pneumoniae R6

62.733

94.985

0.596
  recA Streptococcus pneumoniae Rx1

62.733

94.985

0.596
  recA Streptococcus pneumoniae D39

62.733

94.985

0.596
  recA Streptococcus pneumoniae TIGR4

62.733

94.985

0.596
  recA Lactococcus lactis subsp. cremoris KW2

62.422

94.985

0.593
  recA Streptococcus pyogenes NZ131

61.92

95.28

0.59
  recA Latilactobacillus sakei subsp. sakei 23K

61.92

95.28

0.59
  recA Vibrio cholerae strain A1552

61.111

95.575

0.584
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.111

95.575

0.584
  recA Streptococcus mutans UA159

60.748

94.69

0.575
  recA Pseudomonas stutzeri DSM 10701

60.185

95.575

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.798

97.64

0.555