Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HQ912_RS22550 | Genome accession | NZ_CP054128 |
| Coordinates | 5091115..5092167 (-) | Length | 350 a.a. |
| NCBI ID | WP_047230023.1 | Uniprot ID | A0A1H8TER4 |
| Organism | Pseudomonas sp. MPDS | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 5085232..5129616 | 5091115..5092167 | within | 0 |
Gene organization within MGE regions
Location: 5085232..5129616
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HQ912_RS22510 (HQ912_22510) | - | 5085232..5086158 (+) | 927 | WP_047230031.1 | LysR family transcriptional regulator | - |
| HQ912_RS22515 (HQ912_22515) | - | 5086170..5086532 (-) | 363 | WP_047230030.1 | diacylglycerol kinase | - |
| HQ912_RS22520 (HQ912_22520) | erdR | 5086602..5087255 (-) | 654 | WP_047230029.1 | response regulator transcription factor ErdR | - |
| HQ912_RS22525 (HQ912_22525) | - | 5087480..5088223 (-) | 744 | WP_047230028.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| HQ912_RS22530 (HQ912_22530) | - | 5088405..5088827 (+) | 423 | WP_047230027.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| HQ912_RS22535 (HQ912_22535) | - | 5088828..5089022 (-) | 195 | WP_160891688.1 | hypothetical protein | - |
| HQ912_RS22540 (HQ912_22540) | - | 5089474..5090592 (+) | 1119 | WP_139051024.1 | TIGR00730 family Rossman fold protein | - |
| HQ912_RS22545 (HQ912_22545) | recX | 5090639..5091106 (-) | 468 | WP_107321595.1 | recombination regulator RecX | - |
| HQ912_RS22550 (HQ912_22550) | recA | 5091115..5092167 (-) | 1053 | WP_047230023.1 | recombinase RecA | Machinery gene |
| HQ912_RS22555 (HQ912_22555) | - | 5092251..5092751 (-) | 501 | WP_047230022.1 | CinA family protein | - |
| HQ912_RS22560 (HQ912_22560) | - | 5092821..5093357 (-) | 537 | WP_047230021.1 | lysis system i-spanin subunit Rz | - |
| HQ912_RS22565 (HQ912_22565) | - | 5093339..5093902 (-) | 564 | WP_107323231.1 | glycoside hydrolase family 19 protein | - |
| HQ912_RS22570 (HQ912_22570) | - | 5093928..5094374 (-) | 447 | WP_076386117.1 | phage tail assembly chaperone | - |
| HQ912_RS22575 (HQ912_22575) | - | 5094375..5095271 (-) | 897 | WP_107321594.1 | gp53-like domain-containing protein | - |
| HQ912_RS22580 (HQ912_22580) | - | 5095383..5095943 (-) | 561 | WP_107321593.1 | tail fiber assembly protein | - |
| HQ912_RS22585 (HQ912_22585) | - | 5095951..5097047 (-) | 1097 | Protein_4494 | phage tail protein | - |
| HQ912_RS22590 (HQ912_22590) | - | 5097075..5097584 (-) | 510 | WP_047230015.1 | hypothetical protein | - |
| HQ912_RS22595 (HQ912_22595) | - | 5097581..5098744 (-) | 1164 | WP_107321592.1 | phage tail protein | - |
| HQ912_RS22600 (HQ912_22600) | - | 5098756..5099355 (-) | 600 | WP_047230013.1 | YmfQ family protein | - |
| HQ912_RS22605 (HQ912_22605) | - | 5099343..5100383 (-) | 1041 | WP_047230012.1 | baseplate J/gp47 family protein | - |
| HQ912_RS22610 (HQ912_22610) | - | 5100373..5100771 (-) | 399 | WP_047230011.1 | phage GP46 family protein | - |
| HQ912_RS22615 (HQ912_22615) | - | 5100771..5101280 (-) | 510 | WP_173407326.1 | phage baseplate assembly protein V | - |
| HQ912_RS22620 (HQ912_22620) | - | 5101533..5102573 (-) | 1041 | WP_173407327.1 | phage baseplate assembly protein | - |
| HQ912_RS22625 (HQ912_22625) | - | 5102577..5103815 (-) | 1239 | WP_173407328.1 | DNA circularization protein | - |
| HQ912_RS22630 (HQ912_22630) | - | 5103802..5105376 (-) | 1575 | WP_107321589.1 | phage tail protein | - |
| HQ912_RS22635 (HQ912_22635) | - | 5105507..5105803 (-) | 297 | WP_047230006.1 | phage tail assembly protein | - |
| HQ912_RS22640 (HQ912_22640) | - | 5105800..5106147 (-) | 348 | WP_173407329.1 | phage tail tube protein | - |
| HQ912_RS22645 (HQ912_22645) | - | 5106215..5107711 (-) | 1497 | WP_047230005.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| HQ912_RS22650 (HQ912_22650) | - | 5107711..5107893 (-) | 183 | WP_047230004.1 | DUF2635 domain-containing protein | - |
| HQ912_RS22655 (HQ912_22655) | - | 5107890..5108474 (-) | 585 | WP_047230003.1 | hypothetical protein | - |
| HQ912_RS22660 (HQ912_22660) | - | 5108614..5109630 (-) | 1017 | WP_173407330.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| HQ912_RS22665 (HQ912_22665) | - | 5109640..5109852 (-) | 213 | WP_047230001.1 | tail protein X | - |
| HQ912_RS22670 (HQ912_22670) | - | 5109845..5110228 (-) | 384 | WP_047230000.1 | phage tail protein | - |
| HQ912_RS22675 (HQ912_22675) | - | 5110228..5112405 (-) | 2178 | WP_173407331.1 | phage tail tape measure protein | - |
| HQ912_RS22680 (HQ912_22680) | - | 5112534..5113109 (-) | 576 | WP_173407332.1 | phage tail assembly protein | - |
| HQ912_RS22685 (HQ912_22685) | - | 5113289..5113795 (-) | 507 | WP_047229996.1 | phage major tail tube protein | - |
| HQ912_RS22690 (HQ912_22690) | - | 5113795..5114961 (-) | 1167 | WP_160891670.1 | phage tail protein | - |
| HQ912_RS22695 (HQ912_22695) | - | 5114964..5115191 (-) | 228 | WP_173407333.1 | hypothetical protein | - |
| HQ912_RS22700 (HQ912_22700) | - | 5115277..5115534 (-) | 258 | WP_160891668.1 | tail fiber assembly protein | - |
| HQ912_RS22705 (HQ912_22705) | - | 5115537..5116163 (-) | 627 | WP_160891666.1 | hypothetical protein | - |
| HQ912_RS22710 (HQ912_22710) | - | 5116188..5116718 (-) | 531 | WP_173407334.1 | hypothetical protein | - |
| HQ912_RS22715 (HQ912_22715) | - | 5116715..5117359 (-) | 645 | WP_173407335.1 | phage tail protein I | - |
| HQ912_RS22720 (HQ912_22720) | - | 5117356..5118351 (-) | 996 | WP_173407336.1 | baseplate J/gp47 family protein | - |
| HQ912_RS22725 (HQ912_22725) | - | 5118348..5118680 (-) | 333 | WP_076386161.1 | phage baseplate protein | - |
| HQ912_RS22730 (HQ912_22730) | - | 5118692..5119303 (-) | 612 | WP_076386163.1 | phage baseplate assembly protein V | - |
| HQ912_RS22735 (HQ912_22735) | - | 5119307..5119819 (-) | 513 | WP_160891658.1 | hypothetical protein | - |
| HQ912_RS22740 (HQ912_22740) | - | 5119867..5120217 (-) | 351 | WP_047229987.1 | phage holin family protein | - |
| HQ912_RS22745 (HQ912_22745) | - | 5120733..5121467 (-) | 735 | WP_047230040.1 | helix-turn-helix transcriptional regulator | - |
| HQ912_RS22750 (HQ912_22750) | - | 5122115..5122474 (+) | 360 | WP_173407337.1 | DUF6124 family protein | - |
| HQ912_RS22755 (HQ912_22755) | mutS | 5123212..5125791 (+) | 2580 | WP_076386171.1 | DNA mismatch repair protein MutS | - |
| HQ912_RS22760 (HQ912_22760) | fdxA | 5125934..5126257 (+) | 324 | WP_076386173.1 | ferredoxin FdxA | - |
| HQ912_RS22765 (HQ912_22765) | rpoS | 5126753..5127760 (-) | 1008 | WP_047227588.1 | RNA polymerase sigma factor RpoS | - |
| HQ912_RS22770 (HQ912_22770) | - | 5127867..5128712 (-) | 846 | WP_047227587.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| HQ912_RS22775 (HQ912_22775) | - | 5128939..5129574 (-) | 636 | WP_171061419.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37276.74 Da Isoelectric Point: 5.5226
>NTDB_id=450923 HQ912_RS22550 WP_047230023.1 5091115..5092167(-) (recA) [Pseudomonas sp. MPDS]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLSPVADVKSVANRETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPSISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGTKIGQGKANSAKFLADNPEIAATLEK
QLRDKLLSPVADVKSVANRETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=450923 HQ912_RS22550 WP_047230023.1 5091115..5092167(-) (recA) [Pseudomonas sp. MPDS]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTATGGTCCTGAATCTTCCGGTAAAACCACGCTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCATGTGGGCCTCCAGGCTCGTCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGCCGCACTGGCGCCGTGAAAGAAGGCGACGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCGGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTTAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAATTGCAGCAACCCTCGAGAAG
CAACTGCGTGACAAGCTTCTGAGCCCAGTTGCGGACGTCAAGTCGGTGGCTAACCGCGAGACTGCAGACGACCTGGCTGA
CGCTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCTATTCCTTCCATCTCCACCGGCTCCCTGGGCCTGGACATTGCGCTGGGCATCGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTATGGTCCTGAATCTTCCGGTAAAACCACGCTGACCCTGTCCGTGATCGCC
CAGGCTCAAAAAGCCGGTGCGACCTGCGCCTTCGTCGATGCCGAACACGCCCTGGACCCGGAATATGCCGGCAAGCTGGG
CGTCAACGTCGATGACCTGCTGGTTTCCCAGCCGGACACCGGTGAACAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCTGCACTGGTACCAAAAGCGGAAATCGAAGGTGAAATGGGCGAC
ATGCATGTGGGCCTCCAGGCTCGTCTGATGTCCCAGGCCCTGCGCAAGATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGCCGCACTGGCGCCGTGAAAGAAGGCGACGAGGTTGTCGGCAGCGAA
ACCCGCGTCAAGGTTGTGAAGAACAAGGTCGCTTCGCCGTTCCGTCAGGCGGAGTTCCAGATTCTTTACGGCAAGGGTAT
CTACCTTAATGGCGAGATGATCGACCTGGGTGTGTTGCACGGTTTCGTCGAAAAATCCGGCGCCTGGTATGCCTACAACG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCGGATAACCCGGAAATTGCAGCAACCCTCGAGAAG
CAACTGCGTGACAAGCTTCTGAGCCCAGTTGCGGACGTCAAGTCGGTGGCTAACCGCGAGACTGCAGACGACCTGGCTGA
CGCTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.