Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDM120_RS06945 | Genome accession | NC_017174 |
| Coordinates | 1442223..1443269 (+) | Length | 348 a.a. |
| NCBI ID | WP_003419530.1 | Uniprot ID | A0AAX3GVV5 |
| Organism | Clostridioides difficile M120 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1437433..1488068 | 1442223..1443269 | within | 0 |
Gene organization within MGE regions
Location: 1437433..1488068
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDM120_RS06930 | mnmH | 1439041..1440099 (+) | 1059 | WP_003419524.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDM120_RS06935 | rimO | 1440093..1441427 (+) | 1335 | WP_003419527.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDM120_RS06940 | pgsA | 1441414..1441956 (+) | 543 | WP_009905407.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDM120_RS06945 | recA | 1442223..1443269 (+) | 1047 | WP_003419530.1 | recombinase RecA | Machinery gene |
| CDM120_RS06950 | rny | 1443445..1444986 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDM120_RS06955 | - | 1445296..1447632 (+) | 2337 | WP_003419542.1 | diguanylate cyclase | - |
| CDM120_RS18735 | - | 1448438..1448536 (+) | 99 | Protein_1282 | transposase | - |
| CDM120_RS06960 | tnpB | 1448538..1449656 (+) | 1119 | WP_041160402.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDM120_RS06965 | - | 1449988..1451769 (+) | 1782 | WP_003419546.1 | UvrD-helicase domain-containing protein | - |
| CDM120_RS06970 | lepB | 1451849..1452379 (-) | 531 | WP_009905409.1 | signal peptidase I | - |
| CDM120_RS06975 | - | 1452419..1453243 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDM120_RS06980 | - | 1453500..1454411 (+) | 912 | WP_022615208.1 | tyrosine-type recombinase/integrase | - |
| CDM120_RS06985 | purB | 1454550..1455995 (+) | 1446 | WP_003419557.1 | adenylosuccinate lyase | - |
| CDM120_RS06990 | - | 1456295..1456747 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDM120_RS06995 | - | 1456966..1458162 (-) | 1197 | WP_003419570.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDM120_RS07000 | galT | 1458547..1459497 (+) | 951 | WP_003419573.1 | galactose-1-phosphate uridylyltransferase | - |
| CDM120_RS07005 | - | 1459618..1460370 (+) | 753 | WP_003419575.1 | exodeoxyribonuclease III | - |
| CDM120_RS07010 | - | 1460462..1461238 (-) | 777 | WP_003419578.1 | 3'-5' exonuclease | - |
| CDM120_RS07015 | - | 1461553..1463451 (+) | 1899 | WP_003419583.1 | glutamine synthetase | - |
| CDM120_RS07020 | - | 1463579..1464700 (-) | 1122 | WP_003419591.1 | MGDG synthase family glycosyltransferase | - |
| CDM120_RS07025 | - | 1464899..1465231 (+) | 333 | WP_009905416.1 | PadR family transcriptional regulator | - |
| CDM120_RS07030 | - | 1465218..1466276 (+) | 1059 | WP_003419595.1 | DUF1700 domain-containing protein | - |
| CDM120_RS07035 | - | 1466269..1467339 (+) | 1071 | WP_003419596.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDM120_RS07040 | - | 1467441..1467977 (+) | 537 | WP_003419598.1 | hypothetical protein | - |
| CDM120_RS07045 | - | 1468097..1468804 (+) | 708 | WP_009905418.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDM120_RS07050 | - | 1468865..1469527 (+) | 663 | WP_234702345.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDM120_RS07055 | - | 1469529..1470299 (+) | 771 | WP_003419609.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDM120_RS07060 | - | 1470433..1471824 (+) | 1392 | WP_029158131.1 | sensor histidine kinase | - |
| CDM120_RS07065 | - | 1471900..1472721 (-) | 822 | WP_003419615.1 | pyridoxamine kinase | - |
| CDM120_RS07070 | - | 1472972..1474126 (+) | 1155 | WP_041160403.1 | amidase domain-containing protein | - |
| CDM120_RS07075 | - | 1474309..1474509 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDM120_RS07080 | - | 1474930..1475358 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDM120_RS07085 | - | 1475501..1476256 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDM120_RS07095 | - | 1476957..1477463 (-) | 507 | WP_003419636.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDM120_RS07100 | - | 1477545..1477865 (-) | 321 | WP_003419639.1 | XRE family transcriptional regulator | - |
| CDM120_RS07105 | - | 1478034..1478231 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDM120_RS07110 | - | 1478335..1478775 (+) | 441 | WP_003419643.1 | hypothetical protein | - |
| CDM120_RS07115 | - | 1479024..1479467 (+) | 444 | WP_003419644.1 | phage tail terminator family protein | - |
| CDM120_RS07120 | - | 1479472..1480536 (+) | 1065 | WP_003419645.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDM120_RS07125 | - | 1480550..1480978 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| CDM120_RS07130 | - | 1481092..1481538 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| CDM120_RS19745 | - | 1481565..1481732 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| CDM120_RS07140 | - | 1481732..1484185 (+) | 2454 | WP_003419649.1 | hypothetical protein | - |
| CDM120_RS07145 | - | 1484185..1484607 (+) | 423 | WP_003419651.1 | phage baseplate protein | - |
| CDM120_RS07150 | - | 1484793..1486418 (+) | 1626 | WP_418658135.1 | XkdQ/YqbQ family protein | - |
| CDM120_RS07155 | - | 1486434..1486760 (+) | 327 | WP_003419655.1 | DUF2577 family protein | - |
| CDM120_RS07160 | - | 1486760..1487188 (+) | 429 | WP_003419656.1 | DUF2634 domain-containing protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37387.68 Da Isoelectric Point: 4.8236
>NTDB_id=45087 CDM120_RS06945 WP_003419530.1 1442223..1443269(+) (recA) [Clostridioides difficile M120]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTNEI
DEKVRAFYNLNEEHEEAGNSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=45087 CDM120_RS06945 WP_003419530.1 1442223..1443269(+) (recA) [Clostridioides difficile M120]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGATATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCACTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATACGCAAAAGC
TTTGGGCGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGACTCTCACGTAGGGTTACAAGCTAGACTTATGTCGCAAGCTCTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCATTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGAGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTCGTTAAAAATAAAGTAGCACCTCCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTCTAGATATAGCTGCTGATGTAGATATAGTAAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTAATGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAAGCAGGTAATTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.