Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDCF5_RS06640 | Genome accession | NC_017173 |
| Coordinates | 1432626..1433672 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile CF5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1407113..1468887 | 1432626..1433672 | within | 0 |
Gene organization within MGE regions
Location: 1407113..1468887
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDCF5_RS06535 | rimP | 1410861..1411322 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| CDCF5_RS06540 | nusA | 1411352..1412506 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDCF5_RS06545 | rnpM | 1412513..1412794 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| CDCF5_RS06550 | - | 1412784..1413095 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDCF5_RS06555 | infB | 1413117..1415057 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| CDCF5_RS06560 | rbfA | 1415100..1415480 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDCF5_RS06565 | - | 1415461..1416444 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| CDCF5_RS06570 | truB | 1416457..1417362 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDCF5_RS06575 | - | 1417493..1418422 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDCF5_RS06580 | rpsO | 1418526..1418783 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDCF5_RS06585 | - | 1419023..1419874 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| CDCF5_RS06590 | pnp | 1419999..1422110 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| CDCF5_RS06595 | - | 1422376..1423119 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| CDCF5_RS06600 | - | 1423277..1424524 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| CDCF5_RS06605 | - | 1424559..1424804 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| CDCF5_RS06610 | dapG | 1424814..1426037 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| CDCF5_RS06615 | - | 1426150..1426884 (+) | 735 | WP_003428224.1 | ClpP family protease | - |
| CDCF5_RS06620 | - | 1427007..1429421 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDCF5_RS06625 | mnmH | 1429424..1430482 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDCF5_RS06630 | rimO | 1430476..1431809 (+) | 1334 | Protein_1254 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDCF5_RS06635 | pgsA | 1431796..1432338 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDCF5_RS06640 | recA | 1432626..1433672 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| CDCF5_RS06645 | rny | 1433848..1435389 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDCF5_RS06650 | - | 1436024..1437805 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| CDCF5_RS06655 | lepB | 1437887..1438417 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| CDCF5_RS06660 | - | 1438457..1439281 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| CDCF5_RS06665 | - | 1439538..1440446 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDCF5_RS06670 | purB | 1440590..1442035 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| CDCF5_RS06675 | - | 1442346..1442798 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDCF5_RS06680 | - | 1443202..1444779 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| CDCF5_RS06685 | - | 1444927..1445679 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| CDCF5_RS06690 | - | 1445818..1447179 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| CDCF5_RS06695 | - | 1447270..1448466 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDCF5_RS19015 | - | 1448851..1449243 (+) | 393 | WP_234702310.1 | hypothetical protein | - |
| CDCF5_RS19020 | - | 1449198..1449800 (+) | 603 | WP_234702311.1 | DUF4921 family protein | - |
| CDCF5_RS06705 | - | 1449953..1450705 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| CDCF5_RS06710 | - | 1450797..1451573 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| CDCF5_RS06715 | - | 1451888..1453786 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDCF5_RS06720 | - | 1453914..1455035 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| CDCF5_RS06725 | - | 1455234..1455566 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDCF5_RS06730 | - | 1455553..1456611 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| CDCF5_RS06735 | - | 1456604..1457674 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDCF5_RS06740 | - | 1457776..1458312 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDCF5_RS06745 | - | 1458428..1459135 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDCF5_RS06750 | - | 1459137..1459853 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDCF5_RS06755 | - | 1459855..1460613 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDCF5_RS06760 | - | 1460748..1462136 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| CDCF5_RS06765 | - | 1462212..1463033 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| CDCF5_RS06770 | - | 1463284..1464438 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| CDCF5_RS06775 | - | 1464621..1464821 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDCF5_RS06780 | - | 1465242..1465670 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDCF5_RS06785 | - | 1465813..1466568 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| CDCF5_RS06790 | - | 1466689..1467105 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| CDCF5_RS06795 | - | 1467269..1467775 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDCF5_RS06800 | - | 1467857..1468177 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDCF5_RS06805 | - | 1468346..1468543 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=45070 CDCF5_RS06640 WP_003428218.1 1432626..1433672(+) (recA) [Clostridioides difficile CF5]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=45070 CDCF5_RS06640 WP_003428218.1 1432626..1433672(+) (recA) [Clostridioides difficile CF5]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.