Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC79_RS01040 Genome accession   NZ_CP053988
Coordinates   228438..229484 (-) Length   348 a.a.
NCBI ID   WP_023390916.1    Uniprot ID   W1Q5L4
Organism   Abiotrophia defectiva strain FDAARGOS_785     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 223438..234484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC79_RS01035 (FOC79_01035) - 225587..228352 (+) 2766 WP_023390915.1 YfhO family protein -
  FOC79_RS01040 (FOC79_01040) recA 228438..229484 (-) 1047 WP_023390916.1 recombinase RecA Machinery gene
  FOC79_RS01045 (FOC79_01045) - 229581..230735 (-) 1155 WP_051372909.1 molybdopterin-binding protein -
  FOC79_RS01050 (FOC79_01050) - 230945..231646 (-) 702 WP_023390918.1 TIGR02206 family membrane protein -
  FOC79_RS01055 (FOC79_01055) zwf 231850..233283 (+) 1434 WP_035363864.1 glucose-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37245.62 Da        Isoelectric Point: 5.3382

>NTDB_id=449741 FOC79_RS01040 WP_023390916.1 228438..229484(-) (recA) [Abiotrophia defectiva strain FDAARGOS_785]
MNEDRKKALDKALKDIEKSFGKGSIMRLGEKVDTKISTIPSGSLALDIALGVGGYPRGRIIECYGPESSGKTTVALHAIA
EVQKQGGLAAFIDAEHALDPDYAAALGVNIDELLLSQPDTGEQGLAIADALVTSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGNVNKTKTICFFINQLREKVGIMFGNPETTPGGRALKFYSTVRLEVRKAELIKNGSDVIGSR
AKIKVVKNKVAPPFKEALVDIVYGKGISKVGELVDMAADLDIVNKAGSWYSYGEARIGQGREAAKQYLLDNPEVQAEIEA
RVRAHYKIGEAPETNEEDQVALGGLFQE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=449741 FOC79_RS01040 WP_023390916.1 228438..229484(-) (recA) [Abiotrophia defectiva strain FDAARGOS_785]
ATGAATGAAGACCGCAAAAAAGCCCTAGATAAGGCCCTAAAAGATATTGAAAAAAGCTTTGGTAAGGGTTCCATCATGCG
TCTGGGTGAAAAAGTCGACACCAAAATTTCGACCATTCCGTCAGGTTCCCTGGCTTTAGATATTGCCTTAGGGGTAGGTG
GCTATCCACGAGGTCGAATTATTGAATGTTATGGTCCAGAGTCTTCTGGTAAGACTACTGTGGCTCTCCATGCCATTGCC
GAAGTACAAAAACAAGGGGGCTTGGCTGCCTTCATTGATGCTGAGCATGCCTTGGATCCAGATTATGCTGCCGCTTTAGG
GGTTAACATTGATGAGTTGCTCTTATCCCAACCAGATACAGGTGAACAAGGCTTGGCTATCGCCGATGCCTTGGTAACAT
CAGGGGCGGTTGATATCATTGTCATTGACTCGGTTGCAGCCTTGGTACCACGCGCTGAAATTGATGGGGAGATGGGGGAT
GCCCATGTTGGCTTACAAGCCCGCCTCATGTCCCAAGCGCTTCGTAAATTATCCGGTAATGTCAACAAGACCAAAACCAT
CTGCTTCTTCATCAACCAATTGCGTGAAAAAGTAGGGATTATGTTCGGGAACCCTGAGACAACACCAGGTGGACGTGCCC
TCAAATTCTACTCGACCGTTCGTTTAGAAGTGCGTAAGGCTGAGTTGATTAAGAACGGTAGTGATGTGATTGGTAGCCGT
GCAAAAATCAAGGTTGTTAAGAACAAGGTAGCGCCACCATTCAAGGAAGCCCTAGTAGATATTGTCTACGGTAAAGGGAT
TTCTAAGGTGGGTGAGCTAGTCGATATGGCAGCTGATTTGGATATTGTTAATAAGGCTGGCTCTTGGTACTCTTACGGTG
AAGCGCGTATTGGGCAGGGTCGTGAAGCTGCCAAACAATACCTCTTGGATAACCCAGAAGTACAAGCAGAAATCGAAGCT
CGTGTTCGGGCTCATTATAAGATTGGTGAAGCACCTGAGACTAATGAAGAAGATCAAGTGGCTTTAGGTGGACTTTTCCA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W1Q5L4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.453

98.851

0.756
  recA Bacillus subtilis subsp. subtilis str. 168

76.161

92.816

0.707
  recA Streptococcus mitis SK321

70.058

98.851

0.693
  recA Streptococcus mitis NCTC 12261

69.186

98.851

0.684
  recA Streptococcus mutans UA159

69.912

97.414

0.681
  recA Streptococcus pneumoniae Rx1

69.322

97.414

0.675
  recA Streptococcus pneumoniae D39

69.322

97.414

0.675
  recA Streptococcus pneumoniae R6

69.322

97.414

0.675
  recA Streptococcus pneumoniae TIGR4

69.322

97.414

0.675
  recA Streptococcus pyogenes NZ131

69.697

94.828

0.661
  recA Lactococcus lactis subsp. cremoris KW2

68.196

93.966

0.641
  recA Neisseria gonorrhoeae MS11

58.721

98.851

0.58
  recA Neisseria gonorrhoeae MS11

58.721

98.851

0.58
  recA Neisseria gonorrhoeae strain FA1090

58.721

98.851

0.58
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.28

94.253

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.671

94.253

0.572
  recA Acinetobacter baylyi ADP1

58.235

97.701

0.569
  recA Acinetobacter baumannii D1279779

60.308

93.391

0.563
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.647

97.701

0.563
  recA Pseudomonas stutzeri DSM 10701

58.912

95.115

0.56
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.062

92.816

0.557
  recA Vibrio cholerae strain A1552

60.062

92.816

0.557
  recA Helicobacter pylori 26695

57.396

97.126

0.557
  recA Helicobacter pylori strain NCTC11637

57.396

97.126

0.557
  recA Ralstonia pseudosolanacearum GMI1000

61.022

89.943

0.549
  recA Glaesserella parasuis strain SC1401

59.19

92.241

0.546