Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC61_RS07780 Genome accession   NZ_CP053957
Coordinates   1580217..1581269 (-) Length   350 a.a.
NCBI ID   WP_002453115.1    Uniprot ID   -
Organism   Staphylococcus capitis strain FDAARGOS_753     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1575217..1586269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC61_RS07765 (FOC61_07770) - 1577044..1577838 (-) 795 WP_002453118.1 TIGR00282 family metallophosphoesterase -
  FOC61_RS07770 (FOC61_07775) - 1578001..1578216 (+) 216 WP_002453117.1 hypothetical protein -
  FOC61_RS07775 (FOC61_07780) rny 1578423..1579982 (-) 1560 WP_002453116.1 ribonuclease Y -
  FOC61_RS07780 (FOC61_07785) recA 1580217..1581269 (-) 1053 WP_002453115.1 recombinase RecA Machinery gene
  FOC61_RS07785 (FOC61_07790) - 1581438..1582586 (-) 1149 WP_002453114.1 CinA family nicotinamide mononucleotide deamidase-related protein -
  FOC61_RS07790 (FOC61_07795) pgsA 1582728..1583309 (-) 582 WP_002453113.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  FOC61_RS07795 (FOC61_07800) - 1583337..1583729 (-) 393 WP_002453112.1 helix-turn-helix domain-containing protein -
  FOC61_RS07800 (FOC61_07805) - 1583748..1584575 (-) 828 WP_002453111.1 YmfK family protein -
  FOC61_RS07805 (FOC61_07810) - 1584757..1585464 (-) 708 WP_002453110.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37999.94 Da        Isoelectric Point: 4.9318

>NTDB_id=449488 FOC61_RS07780 WP_002453115.1 1580217..1581269(-) (recA) [Staphylococcus capitis strain FDAARGOS_753]
MDNERQKALDTVIKNMEKSFGKGAVMKLGDNKGRKVSSTSSGSVTVDNALGVGGYPKGRIIEIYGPESSGKTTVALHAIA
EVQKNGGVAAFIDAEHALDPVYAQALGVDIDNLYLSQPDHGEQGLEIAEAFVRSGAVDIVVVDSVAALTPKAEIEGEMGD
THVGLQARLMSQALRKLSGAISKSNTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGQDIVGNR
TKIKVVKNKVAPPFRVVEVDIMYGQGISKEGELIDLGVENDIVDKSGAWYSYNGDRMGQGKENVKTYLKENPQIKEEIDR
KLREKLGIFDGDVEETDAEEEAPKTLFDEE

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=449488 FOC61_RS07780 WP_002453115.1 1580217..1581269(-) (recA) [Staphylococcus capitis strain FDAARGOS_753]
TTGGATAACGAACGTCAAAAAGCTTTAGATACAGTTATAAAAAATATGGAGAAATCATTTGGTAAAGGTGCGGTTATGAA
ATTAGGCGACAATAAAGGTCGTAAAGTATCAAGCACTTCAAGTGGTTCTGTGACGGTGGATAATGCCCTAGGTGTAGGCG
GTTATCCTAAAGGAAGAATTATTGAAATTTATGGACCTGAAAGTTCAGGTAAAACAACAGTTGCTCTACATGCAATTGCA
GAAGTTCAAAAAAATGGTGGAGTAGCTGCATTTATTGATGCCGAACATGCACTTGACCCTGTTTATGCTCAAGCTTTAGG
CGTAGATATTGATAACCTTTATTTATCTCAACCTGACCATGGGGAACAAGGACTTGAAATTGCTGAAGCATTTGTTCGAA
GTGGTGCCGTAGACATTGTCGTAGTTGACTCTGTAGCAGCATTAACACCTAAAGCTGAAATTGAAGGTGAAATGGGAGAT
ACACATGTTGGTTTACAAGCTAGATTAATGTCACAAGCTTTAAGAAAATTATCTGGTGCAATTTCTAAATCAAACACAAC
TGCAATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTGATGTTTGGTAATCCTGAAACTACGCCAGGTGGCCGAGCAT
TAAAATTCTATAGTTCTGTAAGATTGGAAGTAAGAAGAGCTGAACAATTAAAACAAGGCCAAGATATCGTAGGTAACAGA
ACAAAAATCAAAGTTGTAAAAAATAAAGTAGCACCTCCATTCAGAGTAGTTGAAGTAGATATTATGTATGGTCAAGGAAT
TTCTAAAGAAGGTGAATTAATTGACTTAGGTGTTGAAAACGATATCGTTGATAAATCTGGCGCTTGGTATTCTTACAACG
GCGACCGAATGGGTCAAGGTAAAGAAAATGTTAAAACGTATTTAAAAGAAAACCCTCAAATTAAAGAAGAAATTGATCGT
AAATTACGTGAAAAATTAGGAATATTTGATGGTGACGTTGAAGAAACAGATGCTGAAGAGGAAGCACCTAAAACTTTATT
TGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

76.38

93.143

0.711
  recA Latilactobacillus sakei subsp. sakei 23K

71.037

93.714

0.666
  recA Streptococcus pneumoniae TIGR4

63.736

100

0.663
  recA Streptococcus pneumoniae Rx1

63.736

100

0.663
  recA Streptococcus pneumoniae D39

63.736

100

0.663
  recA Streptococcus pneumoniae R6

63.736

100

0.663
  recA Streptococcus mutans UA159

63.408

100

0.649
  recA Streptococcus mitis NCTC 12261

64.205

100

0.646
  recA Streptococcus pyogenes NZ131

68.693

94

0.646
  recA Acinetobacter baumannii D1279779

63.429

100

0.634
  recA Acinetobacter baylyi ADP1

63.401

99.143

0.629
  recA Streptococcus mitis SK321

66.066

95.143

0.629
  recA Neisseria gonorrhoeae strain FA1090

63.953

98.286

0.629
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Neisseria gonorrhoeae MS11

63.953

98.286

0.629
  recA Lactococcus lactis subsp. cremoris KW2

65.559

94.571

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.35

94

0.614
  recA Helicobacter pylori 26695

64.939

93.714

0.609
  recA Helicobacter pylori strain NCTC11637

64.634

93.714

0.606
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.724

93.143

0.603
  recA Vibrio cholerae strain A1552

64.724

93.143

0.603
  recA Pseudomonas stutzeri DSM 10701

59.531

97.429

0.58
  recA Glaesserella parasuis strain SC1401

58

100

0.58
  recA Ralstonia pseudosolanacearum GMI1000

64.537

89.429

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.571

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.755

91.143

0.563