Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FOC66_RS02845 Genome accession   NZ_CP053939
Coordinates   610280..611326 (-) Length   348 a.a.
NCBI ID   WP_003680794.1    Uniprot ID   A0A9X9QZK1
Organism   Neisseria mucosa strain FDAARGOS_758     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 605280..616326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC66_RS02830 (FOC66_02830) pflA 606255..607061 (+) 807 WP_003746445.1 pyruvate formate lyase 1-activating protein -
  FOC66_RS02835 (FOC66_02835) - 607127..608839 (-) 1713 WP_003746446.1 proline--tRNA ligase -
  FOC66_RS02840 (FOC66_02840) fghA 609336..610184 (+) 849 WP_003746449.1 S-formylglutathione hydrolase -
  FOC66_RS02845 (FOC66_02845) recA 610280..611326 (-) 1047 WP_003680794.1 recombinase RecA Machinery gene
  FOC66_RS02850 (FOC66_02850) aroA 611474..612766 (-) 1293 WP_036493605.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  FOC66_RS02855 (FOC66_02855) - 612905..615457 (-) 2553 WP_003746451.1 glycoside hydrolase family 66 protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37603.90 Da        Isoelectric Point: 4.8967

>NTDB_id=449243 FOC66_RS02845 WP_003680794.1 610280..611326(-) (recA) [Neisseria mucosa strain FDAARGOS_758]
MSDEKSKALAAALAQIEKNFGKGSIMKMDGSQQEENLDVISTGSLGVDLALGVGGLPRGRVVEIFGPESSGKTTLCLEAI
AQCQKNGGICAFIDAEHAFDPIYARKLGVKVEELYLSQPDTGEQALEICDTLVRSGGIDMVVVDSVAALVPKAEIEGEMG
DSHVGLQARLMSQALRKLTGHIKRTNTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGQIKKGDDVIGN
ETKVKVIKNKVAPPFRQAEFDILYGEGISWEGELIDLGVKHDIVEKSGAWYSYNGAKIGQGKDNVRVWLKENPDIANEID
AKIRAAVGINVDITEGKLDDTDGERPEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=449243 FOC66_RS02845 WP_003680794.1 610280..611326(-) (recA) [Neisseria mucosa strain FDAARGOS_758]
ATGTCAGACGAAAAAAGCAAAGCCTTAGCCGCAGCCCTTGCCCAAATCGAAAAAAACTTCGGCAAAGGCTCCATCATGAA
AATGGACGGCAGCCAACAGGAAGAAAACCTTGATGTTATTTCTACCGGCTCCCTCGGCGTGGACTTGGCGCTCGGCGTCG
GCGGCCTGCCCCGCGGCCGTGTGGTTGAAATTTTCGGTCCGGAATCCTCCGGTAAAACCACACTCTGTCTCGAGGCCATT
GCCCAATGCCAAAAAAATGGCGGCATCTGCGCATTCATCGATGCAGAGCATGCTTTTGACCCGATTTACGCCCGCAAACT
CGGCGTAAAAGTCGAAGAACTCTATCTCTCCCAACCGGATACCGGCGAACAGGCATTGGAAATCTGCGACACCTTGGTAC
GCTCCGGCGGTATCGATATGGTCGTTGTCGACTCCGTAGCCGCACTTGTGCCTAAAGCCGAGATCGAAGGCGAAATGGGC
GACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAAGCCCTGCGTAAATTGACCGGCCACATCAAACGCACCAATAC
ACTGGTTGTTTTCATTAACCAAATCCGTATGAAAATCGGCGTAATGTTCGGCAGCCCTGAAACCACAACCGGCGGTAACG
CGCTCAAATTCTATGCCTCCGTCCGCCTCGACATCCGCCGTACCGGTCAGATTAAAAAAGGCGATGACGTGATTGGTAAC
GAAACCAAAGTCAAAGTCATCAAAAACAAAGTTGCCCCTCCGTTCCGTCAAGCCGAATTCGATATTCTTTACGGCGAAGG
CATCAGCTGGGAAGGCGAATTGATCGACTTGGGCGTCAAACATGACATCGTTGAAAAATCCGGCGCATGGTACAGCTACA
ACGGCGCAAAAATTGGCCAAGGTAAAGACAATGTACGCGTTTGGCTGAAAGAAAATCCTGATATCGCCAACGAAATCGAT
GCCAAAATCCGTGCGGCAGTCGGTATCAATGTCGATATTACCGAAGGCAAATTGGACGATACCGACGGCGAACGTCCTGA
GGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae MS11

90.23

100

0.902
  recA Neisseria gonorrhoeae strain FA1090

90.23

100

0.902
  recA Ralstonia pseudosolanacearum GMI1000

76.364

94.828

0.724
  recA Acinetobacter baylyi ADP1

71.914

93.103

0.67
  recA Pseudomonas stutzeri DSM 10701

71.692

93.391

0.67
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.988

93.103

0.661
  recA Vibrio cholerae strain A1552

70.988

93.103

0.661
  recA Glaesserella parasuis strain SC1401

70.122

94.253

0.661
  recA Acinetobacter baumannii D1279779

70.37

93.103

0.655
  recA Helicobacter pylori strain NCTC11637

65.569

95.977

0.629
  recA Helicobacter pylori 26695

65.569

95.977

0.629
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.061

94.828

0.626
  recA Bacillus subtilis subsp. subtilis str. 168

66.061

94.828

0.626
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

94.253

0.624
  recA Latilactobacillus sakei subsp. sakei 23K

61.516

98.563

0.606
  recA Streptococcus mutans UA159

59.259

100

0.598
  recA Streptococcus pneumoniae D39

59.195

100

0.592
  recA Streptococcus pneumoniae Rx1

59.195

100

0.592
  recA Streptococcus pneumoniae R6

59.195

100

0.592
  recA Streptococcus pneumoniae TIGR4

59.195

100

0.592
  recA Streptococcus mitis NCTC 12261

59.593

98.851

0.589
  recA Lactococcus lactis subsp. cremoris KW2

61.212

94.828

0.58
  recA Streptococcus pyogenes NZ131

61.212

94.828

0.58
  recA Streptococcus mitis SK321

60.606

94.828

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.939

93.966

0.563