Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HQ394_RS00565 Genome accession   NZ_CP053923
Coordinates   119538..120620 (+) Length   360 a.a.
NCBI ID   WP_190261568.1    Uniprot ID   A0A7H1MXD9
Organism   Defluviicoccus vanus strain Ben 114     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 114538..125620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ394_RS20615 (HQ394_00530) - 114839..115114 (+) 276 WP_190261561.1 flagellar basal body protein -
  HQ394_RS19305 - 115008..115328 (+) 321 WP_223291749.1 flagellar biosynthetic protein FliR -
  HQ394_RS00540 (HQ394_00540) - 115344..115940 (+) 597 WP_190261563.1 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  HQ394_RS00545 (HQ394_00545) - 116039..116179 (-) 141 WP_190261564.1 hypothetical protein -
  HQ394_RS00550 (HQ394_00550) - 116148..117131 (+) 984 Protein_101 two-component system sensor histidine kinase NtrB -
  HQ394_RS00555 (HQ394_00555) - 117095..117772 (+) 678 WP_407644708.1 response regulator -
  HQ394_RS00565 (HQ394_00565) recA 119538..120620 (+) 1083 WP_190261568.1 recombinase RecA Machinery gene
  HQ394_RS00570 (HQ394_00570) - 120743..122128 (+) 1386 WP_190261569.1 SUMF1/EgtB/PvdO family nonheme iron enzyme -
  HQ394_RS00575 (HQ394_00575) - 122313..123674 (-) 1362 WP_190260069.1 IS1182 family transposase -
  HQ394_RS00580 (HQ394_00580) cowN 123977..124291 (+) 315 WP_190261570.1 N(2)-fixation sustaining protein CowN -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38573.86 Da        Isoelectric Point: 5.2022

>NTDB_id=449002 HQ394_RS00565 WP_190261568.1 119538..120620(+) (recA) [Defluviicoccus vanus strain Ben 114]
MFNGRFRLVDGDTVDKTRAIDAAVGQIERAFGKGAIMRLGQRETVETEVVPTGSIGLDIALGIGGLPRGRXIVEIYGPES
SGKTTLALHVIAEAQKRSGICAFIDAEHALDPVYARKLGVDVDNLLISQPDAGEQALEIADTLVRSGAIDVLVVDSVAAL
VPRSELEGEMGDQQPGLQARLMSQAMRKLTGSVSKSRTMIIFINQLRMKIGVMFGNPETTTGGNALKFYASIRLEIRRIG
AIKDRDEVVGNQTRVKVVKNKMAPPFKMVEFDIMYGEGVSKVGELLDLGVKAGVVEKSGSWFSSGSEQIGQGRENAKQYL
REHTALAAEIEGKIRQNAGLVAEALLTGGESSEEEGTAGE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=449002 HQ394_RS00565 WP_190261568.1 119538..120620(+) (recA) [Defluviicoccus vanus strain Ben 114]
ATGTTCAATGGCAGATTTCGCCTCGTGGACGGGGATACAGTGGACAAGACGCGCGCCATCGATGCTGCCGTGGGTCAGAT
CGAACGAGCCTTCGGCAAGGGCGCCATCATGCGCCTGGGTCAACGCGAGACGGTGGAAACCGAAGTCGTCCCCACCGGGT
CGATCGGACTCGATATCGCACTCGGGATCGGCGGCCTGCCGCGAGGGCGANNGATCGTCGAGATCTACGGACCGGAGAGC
TCGGGAAAGACGACGCTCGCGCTGCACGTCATCGCCGAAGCACAGAAGCGCAGCGGCATCTGTGCCTTTATCGATGCCGA
ACATGCGCTTGATCCCGTCTACGCCCGCAAGCTCGGCGTCGATGTGGATAACCTGCTGATTTCGCAGCCGGATGCCGGCG
AACAGGCGCTTGAGATCGCCGACACGCTGGTGCGTTCCGGCGCCATCGACGTCCTCGTCGTCGATTCGGTGGCGGCACTG
GTCCCGCGCAGCGAACTCGAAGGCGAGATGGGTGACCAGCAGCCCGGTCTGCAGGCGCGGCTGATGAGCCAGGCGATGCG
CAAGCTCACCGGCAGCGTGTCGAAGTCGCGGACGATGATCATCTTCATCAACCAGCTGCGGATGAAGATCGGCGTCATGT
TCGGCAATCCGGAGACCACCACCGGCGGCAACGCGCTGAAGTTCTACGCCTCCATTCGCCTGGAAATCCGCCGCATCGGC
GCGATCAAGGACCGCGACGAAGTGGTCGGCAACCAGACTCGGGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAA
GATGGTCGAATTCGACATCATGTACGGCGAGGGCGTATCCAAGGTCGGCGAGCTGCTCGATCTCGGCGTCAAGGCCGGCG
TGGTGGAGAAGTCTGGGTCCTGGTTTTCCTCCGGCTCCGAGCAGATCGGCCAGGGGCGCGAGAACGCCAAACAGTACCTG
CGCGAGCATACCGCGCTCGCCGCCGAAATCGAGGGCAAGATCCGTCAGAACGCCGGCCTCGTCGCCGAGGCCTTGCTGAC
CGGTGGCGAAAGCAGCGAGGAAGAGGGGACGGCGGGCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(18-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

67.477

91.389

0.617
  recA Glaesserella parasuis strain SC1401

63.584

96.111

0.611
  recA Vibrio cholerae strain A1552

64.776

93.056

0.603
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.776

93.056

0.603
  recA Acinetobacter baumannii D1279779

64.776

93.056

0.603
  recA Neisseria gonorrhoeae MS11

62.974

95.278

0.6
  recA Neisseria gonorrhoeae MS11

62.974

95.278

0.6
  recA Neisseria gonorrhoeae strain FA1090

62.974

95.278

0.6
  recA Acinetobacter baylyi ADP1

63.343

94.722

0.6
  recA Pseudomonas stutzeri DSM 10701

66.355

89.167

0.592
  recA Helicobacter pylori strain NCTC11637

61.29

94.722

0.581
  recA Helicobacter pylori 26695

60.997

94.722

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

90.556

0.575
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.942

95

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.31

91.389

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

61.35

90.556

0.556
  recA Streptococcus pneumoniae Rx1

59.819

91.944

0.55
  recA Streptococcus pneumoniae D39

59.819

91.944

0.55
  recA Streptococcus pneumoniae R6

59.819

91.944

0.55
  recA Streptococcus pneumoniae TIGR4

59.819

91.944

0.55
  recA Streptococcus mitis SK321

59.215

91.944

0.544
  recA Streptococcus mutans UA159

56.484

96.389

0.544
  recA Streptococcus pyogenes NZ131

59.574

91.389

0.544
  recA Streptococcus mitis NCTC 12261

58.912

91.944

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.877

90

0.539
  recA Lactococcus lactis subsp. cremoris KW2

57.485

92.778

0.533