Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HQR01_RS11085 Genome accession   NZ_CP053921
Coordinates   2185745..2186809 (-) Length   354 a.a.
NCBI ID   WP_173214923.1    Uniprot ID   A0A7D4AUB9
Organism   Erythrobacter mangrovi strain EB310     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2180745..2191809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQR01_RS11065 (HQR01_11065) - 2181797..2182627 (-) 831 WP_173214919.1 trans-aconitate 2-methyltransferase -
  HQR01_RS11070 (HQR01_11070) - 2182631..2183653 (-) 1023 WP_173214920.1 NAD-dependent epimerase/dehydratase family protein -
  HQR01_RS11075 (HQR01_11075) - 2183653..2184819 (-) 1167 WP_173214921.1 nucleotide sugar dehydrogenase -
  HQR01_RS11080 (HQR01_11080) - 2184906..2185532 (-) 627 WP_173214922.1 glutathione S-transferase family protein -
  HQR01_RS11085 (HQR01_11085) recA 2185745..2186809 (-) 1065 WP_173214923.1 recombinase RecA Machinery gene
  HQR01_RS11090 (HQR01_11090) - 2186958..2189432 (-) 2475 WP_173214924.1 response regulator -
  HQR01_RS11095 (HQR01_11095) - 2189429..2190034 (-) 606 WP_234030144.1 DUF2062 domain-containing protein -
  HQR01_RS11100 (HQR01_11100) smpB 2190139..2190621 (-) 483 WP_173214925.1 SsrA-binding protein SmpB -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38009.52 Da        Isoelectric Point: 5.1869

>NTDB_id=448966 HQR01_RS11085 WP_173214923.1 2185745..2186809(-) (recA) [Erythrobacter mangrovi strain EB310]
MAASLKLVEGKQVDADRQKALDAALAQIDRAFGKGSAMKLGQKQTMQVETISTGSLGLDIALGVGGLPKGRVIEVYGPES
SGKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVDIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVAAL
VPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSINRSKCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRRTG
QIKDRDDIIGNTTRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGVVEKSGSWFSYDSVRIGQGRENAKTFL
KENPEMCAKLEAAIRGRTDEVAEEMMAGPDADED

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=448966 HQR01_RS11085 WP_173214923.1 2185745..2186809(-) (recA) [Erythrobacter mangrovi strain EB310]
ATGGCGGCCAGTCTGAAGCTCGTAGAAGGAAAACAAGTGGACGCAGACCGTCAGAAGGCGCTCGACGCCGCACTCGCGCA
GATCGACCGTGCATTCGGCAAGGGTTCGGCGATGAAGCTGGGCCAGAAGCAAACGATGCAGGTCGAAACGATTTCGACCG
GCTCGCTCGGGCTCGATATTGCGCTGGGCGTGGGTGGCCTTCCCAAGGGTCGCGTGATCGAGGTCTATGGCCCCGAAAGT
TCGGGCAAGACCACCCTGGCGTTGCATGTGATTGCCGAAGCCCAGAAGAACGGTGGTACGGCGGCATTCGTCGATGCCGA
GCATGCGCTCGATCCTGTCTATGCCAAGAAGCTCGGTGTCGACATCGATGAACTGATCGTTTCGCAGCCCGATACGGGCG
AGCAGGCGCTGGAAATCACCGACACACTGGTCCGTTCGAACGCGATCGACGTGCTGGTGGTCGACTCGGTTGCCGCACTG
GTGCCGCGCGCCGAGATCGAAGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCGCGCCTGATGTCGCAGTCGCTGCG
CAAGCTGACCGGCTCGATTAATCGCAGCAAGTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATTGGTGTGATGT
ACGGTAATCCGGAAACCACCACCGGCGGCAACGCGCTCAAGTTTTACGCCTCGGTGCGCCTCGACATTCGCCGCACCGGG
CAGATCAAGGACCGCGACGACATCATCGGCAACACTACCCGCGTGAAAGTGGTCAAGAACAAGGTCGCCCCGCCATTCAA
GCAGGTCGAATTCGACATCATGTATGGTGAAGGCATTTCGAAGATCGGCGAAATCCTCGACCTTGGCGTGAAGGCCGGCG
TGGTCGAGAAGTCGGGAAGCTGGTTCAGCTATGACAGTGTCCGGATTGGCCAGGGACGCGAGAACGCCAAGACCTTCCTC
AAGGAAAATCCCGAGATGTGCGCCAAGTTGGAAGCCGCAATCCGCGGCCGCACCGACGAGGTGGCCGAGGAGATGATGGC
CGGTCCGGACGCGGACGAGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7D4AUB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

69.632

92.09

0.641
  recA Pseudomonas stutzeri DSM 10701

66.569

96.328

0.641
  recA Vibrio cholerae strain A1552

66.864

95.48

0.638
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.864

95.48

0.638
  recA Neisseria gonorrhoeae strain FA1090

69.159

90.678

0.627
  recA Neisseria gonorrhoeae MS11

69.159

90.678

0.627
  recA Neisseria gonorrhoeae MS11

69.159

90.678

0.627
  recA Bacillus subtilis subsp. subtilis str. 168

68.847

90.678

0.624
  recA Acinetobacter baylyi ADP1

64.327

96.61

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.871

92.09

0.616
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.158

96.61

0.61
  recA Helicobacter pylori 26695

63.422

95.763

0.607
  recA Helicobacter pylori strain NCTC11637

63.422

95.763

0.607
  recA Acinetobacter baumannii D1279779

66.254

91.243

0.605
  recA Ralstonia pseudosolanacearum GMI1000

69.156

87.006

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

64.688

90.395

0.585
  recA Streptococcus pyogenes NZ131

60.411

96.328

0.582
  recA Streptococcus pneumoniae R6

60.058

96.893

0.582
  recA Streptococcus pneumoniae TIGR4

60.058

96.893

0.582
  recA Streptococcus pneumoniae Rx1

60.058

96.893

0.582
  recA Streptococcus pneumoniae D39

60.058

96.893

0.582
  recA Streptococcus mitis SK321

62.006

92.938

0.576
  recA Streptococcus mutans UA159

59.531

96.328

0.573
  recA Streptococcus mitis NCTC 12261

61.702

92.938

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.61

91.243

0.562
  recA Lactococcus lactis subsp. cremoris KW2

59.878

92.938

0.556