Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HRD56_RS04920 Genome accession   NZ_CP053898
Coordinates   1078361..1079428 (+) Length   355 a.a.
NCBI ID   WP_004247401.1    Uniprot ID   A0A9Q4SXC1
Organism   Proteus mirabilis strain YPM35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1073361..1084428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD56_RS04900 (HRD56_04900) aroL 1073737..1074249 (+) 513 WP_004244785.1 shikimate kinase AroL -
  HRD56_RS04905 (HRD56_04905) aas 1074353..1076512 (+) 2160 WP_080973413.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  HRD56_RS04910 (HRD56_04910) lplT 1076512..1077714 (+) 1203 WP_012367571.1 lysophospholipid transporter LplT -
  HRD56_RS04915 (HRD56_04915) pncC 1077747..1078253 (+) 507 WP_017628346.1 nicotinamide-nucleotide amidase -
  HRD56_RS04920 (HRD56_04920) recA 1078361..1079428 (+) 1068 WP_004247401.1 recombinase RecA Machinery gene
  HRD56_RS04925 (HRD56_04925) alaS 1080330..1082957 (+) 2628 WP_004244779.1 alanine--tRNA ligase -
  HRD56_RS04930 (HRD56_04930) csrA 1083175..1083363 (+) 189 WP_004244778.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38219.40 Da        Isoelectric Point: 4.9615

>NTDB_id=448833 HRD56_RS04920 WP_004247401.1 1078361..1079428(+) (recA) [Proteus mirabilis strain YPM35]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMNVETISTGSLSLDVALGAGGLPRGRIVEIYGPESSGKTTLTLQV
IASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATNYLKEHPEMYNEL
NTKLREMLLNHAGEFTSAADFAGEESDSDADDTKE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=448833 HRD56_RS04920 WP_004247401.1 1078361..1079428(+) (recA) [Proteus mirabilis strain YPM35]
ATGGCTATTGATGAAAACAAACAAAAAGCATTGGCCGCAGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGTCTGGGCGAAGACCGTTCCATGAACGTAGAAACTATCTCTACAGGATCTTTATCATTAGACGTTGCTTTAGGTG
CAGGTGGATTGCCACGTGGCCGTATTGTTGAAATCTATGGCCCTGAATCTTCTGGTAAAACAACCTTGACTCTACAAGTT
ATTGCCTCTGCTCAGCGTGAAGGAAAAATTTGTGCATTTATTGATGCTGAACATGCATTAGACCCAATTTATGCTCAAAA
GCTAGGTGTCGATATCGATAATCTACTCTGCTCTCAACCTGACACAGGTGAACAAGCACTGGAAATTTGTGATGCATTAT
CTCGCTCTGGTGCGGTCGATGTTATTGTCGTGGACTCCGTGGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACACGTTGGTTTAGCTGCACGTATGATGAGCCAAGCTATGCGTAAACTAGCGGGTAACCTTAAAAACTCTAA
CACACTACTGATTTTCATTAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAACCCAGAAACCACGACCGGTGGTA
ATGCGCTTAAATTCTATGCTTCTGTTCGTTTAGACATTCGTCGCATTGGCTCTGTCAAAAATGGTGATGAAGTCATTGGT
AGTGAGACTCGCGTTAAAGTTGTTAAAAATAAAGTGGCTGCACCGTTTAAACAAGCTGAATTCCAAATTATGTACGGTGA
AGGTATTAATACCTATGGCGAACTGATTGATTTAGGTGTTAAACATAAGTTAGTAGAGAAAGCGGGTGCTTGGTATAGCT
ACAATGGCGAAAAAATCGGTCAAGGTAAAGCTAACGCAACCAATTACTTAAAAGAACATCCTGAAATGTACAATGAGTTA
AACACTAAATTACGTGAAATGTTGTTAAATCATGCTGGTGAATTCACAAGTGCTGCGGATTTTGCAGGTGAAGAGTCAGA
CAGTGATGCTGACGACACAAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.05

96.62

0.783
  recA Vibrio cholerae strain A1552

81.05

96.62

0.783
  recA Pseudomonas stutzeri DSM 10701

72.046

97.746

0.704
  recA Acinetobacter baylyi ADP1

71.014

97.183

0.69
  recA Glaesserella parasuis strain SC1401

68.605

96.901

0.665
  recA Acinetobacter baumannii D1279779

72.171

92.113

0.665
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.831

0.637
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.606

0.625
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.047

96.901

0.592
  recA Streptococcus pneumoniae R6

62.13

95.211

0.592
  recA Streptococcus pneumoniae Rx1

62.13

95.211

0.592
  recA Streptococcus pneumoniae D39

62.13

95.211

0.592
  recA Streptococcus pneumoniae TIGR4

62.13

95.211

0.592
  recA Helicobacter pylori 26695

63.609

92.113

0.586
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Lactococcus lactis subsp. cremoris KW2

63.385

91.549

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.423

0.58
  recA Streptococcus pyogenes NZ131

63.077

91.549

0.577
  recA Streptococcus mitis NCTC 12261

63.158

90.986

0.575
  recA Streptococcus mitis SK321

63.158

90.986

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

91.549

0.575
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

93.239

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.423

0.541