Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HRD55_RS04535 Genome accession   NZ_CP053896
Coordinates   1033926..1034993 (+) Length   355 a.a.
NCBI ID   WP_004264809.1    Uniprot ID   -
Organism   Providencia rettgeri strain YPR31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028926..1039993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRD55_RS04515 (HRD55_04515) aroL 1029314..1029811 (+) 498 WP_004264804.1 shikimate kinase AroL -
  HRD55_RS04520 (HRD55_04520) aas 1029952..1032099 (+) 2148 WP_004264805.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  HRD55_RS04525 (HRD55_04525) lplT 1032101..1033303 (+) 1203 WP_036958917.1 lysophospholipid transporter LplT -
  HRD55_RS04530 (HRD55_04530) pncC 1033318..1033821 (+) 504 WP_004264808.1 nicotinamide-nucleotide amidase -
  HRD55_RS04535 (HRD55_04535) recA 1033926..1034993 (+) 1068 WP_004264809.1 recombinase RecA Machinery gene
  HRD55_RS04540 (HRD55_04540) alaS 1035320..1037947 (+) 2628 WP_172766840.1 alanine--tRNA ligase -
  HRD55_RS04545 (HRD55_04545) csrA 1038175..1038360 (+) 186 WP_004264815.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38198.53 Da        Isoelectric Point: 4.8129

>NTDB_id=448816 HRD55_RS04535 WP_004264809.1 1033926..1034993(+) (recA) [Providencia rettgeri strain YPR31]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDVALGAGGLPLGRIVEIYGPESSGKTTLTLQV
IAAAQRSGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKTSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKNGEEIIG
SETRVKVVKNKVAAPFKQAEFQILYGEGINTFGELIDLGVKHKLIEKAGAWYSYNGDKIGQGKANSTNYLKEHPEVAQEI
DTKLREMLLNHTGEFSSAATDFISDADEEETPEEF

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=448816 HRD55_RS04535 WP_004264809.1 1033926..1034993(+) (recA) [Providencia rettgeri strain YPR31]
ATGGCTATTGATGAAAACAAACAAAAAGCACTTGCAGCAGCATTAGGCCAAATTGAAAAGCAATTTGGTAAAGGTTCCAT
TATGCGTCTTGGTGAAGACCGCTCTATGGATGTTGAAACTATCTCAACAGGCTCCTTATCCCTTGATGTTGCATTGGGTG
CTGGTGGCTTGCCACTAGGTCGTATTGTTGAAATCTACGGCCCTGAATCTTCAGGTAAAACAACACTAACTCTGCAAGTT
ATTGCTGCAGCGCAACGTAGTGGTAAAACATGTGCTTTCATCGATGCTGAACACGCTTTAGACCCTATCTATGCTAAAAA
ATTAGGCGTTGATATCGATAACTTACTATGTTCTCAACCGGACACCGGTGAGCAAGCGCTAGAAATTTGTGATGCATTAA
CTCGCTCAGGTGCGGTTGATGTGATCATCGTTGACTCCGTTGCTGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACATATGGGCCTAGCTGCTCGTATGATGAGCCAAGCAATGCGTAAGTTAGCTGGTAACTTAAAAACATCTAA
TACCTTACTGATCTTTATCAACCAAATTCGTATGAAGATTGGTGTTATGTTTGGTAACCCAGAAACAACAACAGGTGGTA
ATGCATTAAAATTCTACGCATCTGTTCGTTTAGACATCCGCCGTATTGGTGCTGTTAAAAATGGCGAAGAAATCATCGGT
AGTGAAACTCGCGTTAAAGTGGTAAAAAACAAAGTTGCAGCACCGTTCAAACAAGCTGAATTCCAAATTTTGTATGGTGA
AGGTATTAATACCTTCGGCGAGCTAATTGACTTAGGTGTAAAACATAAGTTAATTGAAAAAGCAGGGGCTTGGTATAGTT
ATAACGGCGATAAAATTGGCCAAGGTAAAGCTAACTCAACAAATTATTTAAAAGAGCACCCTGAAGTCGCTCAAGAAATT
GATACCAAACTGCGTGAAATGTTATTGAATCATACTGGTGAATTTAGTAGTGCAGCAACAGACTTTATCAGTGATGCTGA
TGAAGAAGAAACACCAGAAGAATTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

80.168

100

0.808
  recA Vibrio cholerae strain A1552

80.168

100

0.808
  recA Pseudomonas stutzeri DSM 10701

71.676

97.465

0.699
  recA Acinetobacter baylyi ADP1

70.402

98.028

0.69
  recA Acinetobacter baumannii D1279779

69.516

98.873

0.687
  recA Glaesserella parasuis strain SC1401

68.661

98.873

0.679
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae MS11

65.439

99.437

0.651
  recA Neisseria gonorrhoeae strain FA1090

65.439

99.437

0.651
  recA Ralstonia pseudosolanacearum GMI1000

70.418

87.606

0.617
  recA Helicobacter pylori strain NCTC11637

63.609

92.113

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

59.091

99.155

0.586
  recA Helicobacter pylori 26695

63.303

92.113

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.95

89.859

0.575
  recA Lactococcus lactis subsp. cremoris KW2

62.229

90.986

0.566
  recA Streptococcus pneumoniae Rx1

62.229

90.986

0.566
  recA Streptococcus pneumoniae D39

62.229

90.986

0.566
  recA Streptococcus pneumoniae R6

62.229

90.986

0.566
  recA Streptococcus pneumoniae TIGR4

62.229

90.986

0.566
  recA Streptococcus mitis SK321

61.92

90.986

0.563
  recA Streptococcus pyogenes NZ131

61.538

91.549

0.563
  recA Streptococcus mutans UA159

61.538

91.549

0.563
  recA Streptococcus mitis NCTC 12261

61.61

90.986

0.561
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.639

93.521

0.558
  recA Bacillus subtilis subsp. subtilis str. 168

61.682

90.423

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.423

0.544