Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HQ614_RS10100 Genome accession   NZ_CP053889
Coordinates   1999274..2000413 (-) Length   379 a.a.
NCBI ID   WP_001085740.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1994274..2005413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ614_RS10075 (HQ614_10040) - 1995638..1997179 (-) 1542 WP_000230040.1 membrane protein -
  HQ614_RS10680 - 1997225..1997347 (-) 123 WP_001285708.1 hypothetical protein -
  HQ614_RS10080 (HQ614_10045) - 1997430..1997747 (-) 318 WP_000940931.1 DUF1292 domain-containing protein -
  HQ614_RS10085 (HQ614_10050) ruvX 1997773..1998192 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  HQ614_RS10090 (HQ614_10055) - 1998192..1998458 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  HQ614_RS10095 (HQ614_10060) spx 1998660..1999058 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  HQ614_RS10100 (HQ614_10065) recA 1999274..2000413 (-) 1140 WP_001085740.1 recombinase RecA Machinery gene
  HQ614_RS10105 (HQ614_10070) cinA 2000487..2001746 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  HQ614_RS10110 (HQ614_10075) - 2001835..2002386 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  HQ614_RS10115 (HQ614_10080) ruvA 2002409..2002999 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA -
  HQ614_RS10120 (HQ614_10085) - 2003001..2004233 (-) 1233 WP_000657472.1 MFS transporter -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 40931.46 Da        Isoelectric Point: 5.0474

>NTDB_id=448663 HQ614_RS10100 WP_001085740.1 1999274..2000413(-) (recA) [Streptococcus agalactiae strain SS43]
MAKKTKKAEEITKKFGDERRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGEHKDHNIGKETKIKVVKNKVAPPFREAFVEIMYGEGISRTGELIKIASDLDIIQKAGAWYSYNGEKIGQGSE
NAKKYLADNPAIFDEIDHKVRVHFGMTEDDSPVQSELVEEKNEADDLVLDLDNAIEIEE

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=448663 HQ614_RS10100 WP_001085740.1 1999274..2000413(-) (recA) [Streptococcus agalactiae strain SS43]
TTGGCTAAAAAAACGAAAAAAGCAGAAGAAATTACTAAGAAATTCGGTGATGAACGTCGAAAAGCCTTAGATGATGCTTT
GAAAAATATTGAAAAAGATTTTGGTAAGGGCGCAGTGATGCGCTTAGGTGAGCGAGCTGAACAAAAGGTTCAAGTAATGA
GTTCAGGTTCTCTTGCTTTAGATATCGCTTTAGGAGCAGGTGGATATCCTAAAGGACGTATCGTCGAAATTTATGGACCA
GAGTCATCTGGTAAAACAACGGTTGCCCTTCATGCCGTAGCTCAAGCCCAAAAGGAAGGTGGGATTGCTGCCTTTATTGA
TGCTGAGCACGCTCTTGACCCAGCCTATGCTGCGGCTCTTGGAGTTAATATTGATGAGTTACTCTTGTCTCAACCTGACT
CAGGTGAGCAAGGTCTTGAAATTGCAGGTAAATTGATTGATTCAGGCGCAGTTGATTTAGTTGTTGTCGATTCAGTTGCA
GCCCTTGTTCCTCGTGCTGAGATTGATGGTGATATTGGTGACAGCCACGTTGGTTTGCAAGCTCGTATGATGAGTCAAGC
AATGCGTAAATTGTCAGCATCCATTAACAAGACAAAGACAATCGCAATTTTTATCAACCAGCTAAGGGAAAAAGTAGGCG
TTATGTTTGGTAACCCTGAAACAACACCTGGTGGTCGTGCTTTGAAATTTTATTCATCGGTTCGTCTAGATGTTCGTGGT
AATACTCAAATCAAGGGGACTGGTGAGCATAAAGATCATAATATTGGTAAAGAGACAAAAATCAAAGTTGTTAAAAATAA
AGTTGCTCCACCATTCCGTGAAGCTTTTGTCGAAATTATGTATGGTGAAGGTATTTCTCGCACGGGTGAGTTAATTAAAA
TTGCTAGTGATTTGGATATTATCCAAAAAGCAGGTGCATGGTACTCATATAATGGTGAGAAAATTGGACAAGGTTCTGAA
AATGCCAAAAAATATTTAGCAGATAATCCAGCAATTTTTGATGAAATTGACCATAAAGTGCGCGTGCACTTTGGAATGAC
TGAAGATGATTCGCCAGTTCAGTCTGAGCTCGTTGAAGAAAAAAATGAAGCTGATGATCTTGTTTTAGATTTGGACAATG
CTATTGAAATTGAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

89.295

100

0.902
  recA Streptococcus pyogenes NZ131

89.446

100

0.894
  recA Streptococcus mitis NCTC 12261

85.302

100

0.858
  recA Streptococcus mitis SK321

84.777

100

0.852
  recA Streptococcus pneumoniae Rx1

83.377

100

0.847
  recA Streptococcus pneumoniae D39

83.377

100

0.847
  recA Streptococcus pneumoniae R6

83.377

100

0.847
  recA Streptococcus pneumoniae TIGR4

83.377

100

0.847
  recA Lactococcus lactis subsp. cremoris KW2

77.011

91.821

0.707
  recA Latilactobacillus sakei subsp. sakei 23K

69.412

89.71

0.623
  recA Bacillus subtilis subsp. subtilis str. 168

68.997

86.807

0.599
  recA Acinetobacter baylyi ADP1

59.943

92.876

0.557
  recA Neisseria gonorrhoeae MS11

63.142

87.335

0.551
  recA Neisseria gonorrhoeae MS11

63.142

87.335

0.551
  recA Neisseria gonorrhoeae strain FA1090

63.142

87.335

0.551
  recA Acinetobacter baumannii D1279779

58.807

92.876

0.546
  recA Vibrio cholerae strain A1552

59.143

92.348

0.546
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.143

92.348

0.546
  recA Glaesserella parasuis strain SC1401

60.588

89.71

0.544
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.702

86.807

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

85.224

0.528
  recA Pseudomonas stutzeri DSM 10701

57.225

91.293

0.522
  recA Ralstonia pseudosolanacearum GMI1000

59.517

87.335

0.52
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.771

89.974

0.52
  recA Helicobacter pylori strain NCTC11637

57.101

91.029

0.52
  recA Helicobacter pylori 26695

57.101

91.029

0.52