Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HQ398_RS15290 Genome accession   NZ_CP053882
Coordinates   3294201..3295265 (-) Length   354 a.a.
NCBI ID   WP_104016529.1    Uniprot ID   -
Organism   Aeromonas jandaei strain 3036     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3289201..3300265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HQ398_RS15275 (HQ398_15250) - 3289472..3290710 (-) 1239 WP_041210820.1 aspartate kinase -
  HQ398_RS15280 (HQ398_15255) alaS 3290727..3293351 (-) 2625 WP_215805924.1 alanine--tRNA ligase -
  HQ398_RS15285 (HQ398_15260) - 3293647..3294156 (-) 510 WP_215808416.1 regulatory protein RecX -
  HQ398_RS15290 (HQ398_15265) recA 3294201..3295265 (-) 1065 WP_104016529.1 recombinase RecA Machinery gene
  HQ398_RS15295 (HQ398_15270) pncC 3295346..3295837 (-) 492 WP_215805926.1 nicotinamide-nucleotide amidase -
  HQ398_RS15300 (HQ398_15275) mutS 3296055..3298637 (+) 2583 WP_215805928.1 DNA mismatch repair protein MutS -
  HQ398_RS15305 (HQ398_15280) - 3298724..3299584 (-) 861 WP_215805930.1 patatin family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37917.54 Da        Isoelectric Point: 4.8912

>NTDB_id=448387 HQ398_RS15290 WP_104016529.1 3294201..3295265(-) (recA) [Aeromonas jandaei strain 3036]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKTCAFVDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGAGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFAENKALAGEVEA
KLRELLLSGAVPVDDKAAPVEAEEFDAESEQEFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=448387 HQ398_RS15290 WP_104016529.1 3294201..3295265(-) (recA) [Aeromonas jandaei strain 3036]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATCTCCACCGGCTCCCTCTCTCTGGACGTGGCGCTGGGGATCGGTG
GTCTGCCGTGCGGTCGTATCGTCGAGATCTACGGCCCGGAATCTTCCGGTAAAACCACGCTGACCCTGCAGGTGATCGCC
GAAGCCCAGAAGAAGGGCAAGACCTGTGCCTTCGTCGATGCGGAGCACGCGCTGGATCCCATCTATGCCGCCAAGCTGGG
CGTCAACGTCGACGACCTGCTTATCTCCCAGCCGGATACCGGTGAACAGGCGCTGGAGATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCCGTGGCGGCCCTGACTCCGAAAGCGGAAATCGAAGGCGAGATGGGTGAC
TCCCACGTCGGCCTGCAGGCCCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGCATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGTAGCCCGGAGACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCCGTGCGTCTGGATATCCGTCGTACCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGCGTCAAGGTAGTGAAGAACAAGGTGGCACCTCCCTTCAAGCAGGCCGAATTCCAGATCTTCTACGGTGCCGGTAT
CTCCAAAGAGGGCGAGCTGGTGGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCGGGTGCCTGGTACAGCTACAACG
GCGAGAAGATTGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTTGCCGAGAACAAGGCGCTGGCTGGCGAAGTGGAAGCC
AAACTGCGCGAGCTGCTGCTCTCCGGTGCCGTGCCAGTCGATGACAAGGCTGCTCCGGTTGAGGCAGAAGAGTTCGATGC
CGAAAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.011

98.305

0.757
  recA Vibrio cholerae strain A1552

79.268

92.655

0.734
  recA Vibrio cholerae O1 biovar El Tor strain E7946

79.268

92.655

0.734
  recA Acinetobacter baylyi ADP1

72.384

97.175

0.703
  recA Acinetobacter baumannii D1279779

72.595

96.893

0.703
  recA Glaesserella parasuis strain SC1401

70.255

99.718

0.701
  recA Ralstonia pseudosolanacearum GMI1000

72.948

92.938

0.678
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae MS11

72.393

92.09

0.667
  recA Neisseria gonorrhoeae strain FA1090

72.393

92.09

0.667
  recA Helicobacter pylori strain NCTC11637

61.96

98.023

0.607
  recA Helicobacter pylori 26695

61.383

98.023

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

93.503

0.602
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.517

90.113

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

90.678

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

61.027

93.503

0.571
  recA Streptococcus pneumoniae R6

61.61

91.243

0.562
  recA Streptococcus pneumoniae TIGR4

61.61

91.243

0.562
  recA Streptococcus pneumoniae Rx1

61.61

91.243

0.562
  recA Streptococcus pneumoniae D39

61.61

91.243

0.562
  recA Streptococcus mitis SK321

61.3

91.243

0.559
  recA Streptococcus mitis NCTC 12261

61.3

91.243

0.559
  recA Streptococcus pyogenes NZ131

60.991

91.243

0.556
  recA Streptococcus mutans UA159

60.681

91.243

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.451

92.655

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.243

0.531