Detailed information NTG0448146

Bioinformatically predicted

Overview

• Name: Cj0011c
• Type: Machinery gene
• Locus tag: CUP3940_RS03100
• Genome accession: NZ_CP053849
• Coordinates: 603011..603250 (+)
• Length: 79 a.a.
• NCBI ID: WP_004277072.1
• Uniprot ID: A0A381DUK5
• Organism: Campylobacter upsaliensis RM3940
• Function: DNA binding (predicted from homology) DNA binding and uptake

Genomic Context

Location: 598011..608250

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CUP3940_RS03080 (CUP3940_0599)	-	600730..601413 (+)	684	WP_176318713.1	3-methyladenine DNA glycosylase	-
CUP3940_RS03085 (CUP3940_0600)	-	601410..601820 (-)	411	WP_115635680.1	PepSY-like domain-containing protein	-
CUP3940_RS03090 (CUP3940_0601)	-	601914..602450 (+)	537	WP_004277070.1	rhomboid family intramembrane serine protease	-
CUP3940_RS03095 (CUP3940_0602)	-	602447..602938 (+)	492	WP_004277071.1	histidine phosphatase family protein	-
CUP3940_RS03100 (CUP3940_0603)	Cj0011c	603011..603250 (+)	240	WP_004277072.1	DUF655 domain-containing protein	Machinery gene
CUP3940_RS03105 (CUP3940_0604)	-	603296..606304 (-)	3009	WP_176318331.1	efflux RND transporter permease subunit	-
CUP3940_RS03110 (CUP3940_0605)	-	606305..607048 (-)	744	WP_004277074.1	efflux RND transporter periplasmic adaptor subunit	-

Sequence

Protein

• Length: 79 a.a.
• Molecular weight: 8974.56 Da
• Isoelectric Point: 8.5316

>NTDB_id=448146 CUP3940_RS03100 WP_004277072.1 603011..603250(+) (Cj0011c) [Campylobacter upsaliensis RM3940]
MKKIFFLMFALASFLFAAVNLNTATLEELKSLKGIGETKARAILDYRKEQNFTSIEELKKVKGIGEKTFEELKDSIVVE

Nucleotide

• Length: 240 bp

>NTDB_id=448146 CUP3940_RS03100 WP_004277072.1 603011..603250(+) (Cj0011c) [Campylobacter upsaliensis RM3940]
ATGAAAAAAATATTTTTCTTAATGTTTGCTTTAGCGAGTTTTTTGTTTGCGGCTGTGAATTTAAATACTGCTACGCTTGA
AGAATTAAAAAGCTTAAAAGGCATAGGAGAGACCAAGGCGAGAGCGATTTTAGATTATAGAAAAGAGCAAAATTTCACAA
GTATAGAAGAGCTTAAAAAGGTTAAGGGTATAGGCGAAAAAACTTTTGAAGAATTAAAAGATTCTATCGTTGTGGAGTAG

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (18-76)

3D structure

• AlphaFold DB: A0A381DUK5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	70.886	100	0.709
comE	Neisseria gonorrhoeae MS11	46.914	100	0.481
comE	Neisseria gonorrhoeae MS11	46.914	100	0.481
comE	Neisseria gonorrhoeae MS11	46.914	100	0.481
comE	Neisseria gonorrhoeae MS11	46.914	100	0.481
comEA	Bacillus subtilis subsp. subtilis str. 168	57.143	79.747	0.456
comEA/celA/cilE	Streptococcus mitis NCTC 12261	54.839	78.481	0.43
comEA/celA/cilE	Streptococcus pneumoniae Rx1	54.839	78.481	0.43
comEA/celA/cilE	Streptococcus pneumoniae D39	54.839	78.481	0.43
comEA/celA/cilE	Streptococcus pneumoniae R6	54.839	78.481	0.43
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	54.839	78.481	0.43
comEA	Lactococcus lactis subsp. cremoris KW2	53.226	78.481	0.418
comEA/celA/cilE	Streptococcus mitis SK321	53.226	78.481	0.418
comEA	Latilactobacillus sakei subsp. sakei 23K	50.794	79.747	0.405
comEA	Legionella pneumophila strain ERS1305867	48.485	83.544	0.405
comEA	Legionella pneumophila str. Paris	48.485	83.544	0.405
comEA	Staphylococcus aureus MW2	57.143	70.886	0.405
comEA	Staphylococcus aureus N315	57.143	70.886	0.405
comEA	Vibrio cholerae C6706	58.491	67.089	0.392
comEA	Vibrio cholerae strain A1552	58.491	67.089	0.392
comE1/comEA	Haemophilus influenzae Rd KW20	50.82	77.215	0.392
comEA	Vibrio parahaemolyticus RIMD 2210633	50	78.481	0.392
comEA/comE1	Glaesserella parasuis strain SC1401	49.206	79.747	0.392
comEA	Acinetobacter baumannii D1279779	46.032	79.747	0.367
comEA	Acinetobacter baylyi ADP1	47.541	77.215	0.367
comEA	Vibrio campbellii strain DS40M4	46.774	78.481	0.367