Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ALANTH_RS10685 Genome accession   NZ_CP053839
Coordinates   2132919..2133965 (+) Length   348 a.a.
NCBI ID   WP_026804219.1    Uniprot ID   A0A366MM60
Organism   Aliarcobacter lanthieri strain LMG 28516     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127919..2138965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALANTH_RS10660 (ALANTH_2130) pseG 2128772..2129683 (-) 912 WP_026808344.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  ALANTH_RS10665 (ALANTH_2131) pseF 2129680..2130381 (-) 702 WP_026808343.1 pseudaminic acid cytidylyltransferase -
  ALANTH_RS10670 (ALANTH_2132) pseC 2130374..2131540 (-) 1167 WP_026808342.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  ALANTH_RS10675 (ALANTH_2133) pseB 2131537..2132529 (-) 993 WP_026804221.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  ALANTH_RS10680 (ALANTH_2134) - 2132648..2132836 (+) 189 WP_026804220.1 hypothetical protein -
  ALANTH_RS10685 (ALANTH_2135) recA 2132919..2133965 (+) 1047 WP_026804219.1 recombinase RecA Machinery gene
  ALANTH_RS10690 (ALANTH_2136) - 2133990..2134838 (-) 849 WP_026804218.1 biotin synthase -
  ALANTH_RS10695 (ALANTH_2137) - 2134828..2135340 (-) 513 WP_026808341.1 metallophosphoesterase family protein -
  ALANTH_RS10700 (ALANTH_2138) topA 2135341..2137677 (-) 2337 WP_026808340.1 type I DNA topoisomerase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37311.68 Da        Isoelectric Point: 4.7387

>NTDB_id=448061 ALANTH_RS10685 WP_026804219.1 2132919..2133965(+) (recA) [Aliarcobacter lanthieri strain LMG 28516]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGEIVDYGVKLDIIDKAGAWFSYGDTKIGQGRENAKVFLKDNPEISKEIE
DKILNSMGINDAIITGGSDEEDTASLDD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=448061 ALANTH_RS10685 WP_026804219.1 2132919..2133965(+) (recA) [Aliarcobacter lanthieri strain LMG 28516]
ATGGATGAAAATCAAAAAAAATCACTTGAATTAGCAATAAAACAAATAGACAAAGCATTTGGAAAAGGAACTTTAATAAG
ACTTGGGGATAAAGAAGTTATTCCAACAGAAGCAATAAGTACAGGTTCTTTAGGGCTTGATTTAGCTTTAGGAGTTGGTG
GATTACCAAAAGGAAGAGTTATAGAGATATATGGACCAGAAAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCA
GAAGCTCAAAAAGCTGGTGGAGTTTGTGCTTTTATTGATGCAGAACATGCTTTAGATGTAAAATATGCAAAAGATATCGG
AGTTGATACAGATAATTTACTTGTTTCTCAACCTGATTTTGGTGAACAAGCTTTAGAAATTTTAGAAACTGTTATAAGAA
GTGGTGCAGTTGATTTAGTTGTTGTAGATTCAGTTGCAGCTCTTACTCCAAAAGTAGAAATAGATGGAGATATGGATGAT
CAACAAGTTGGAGTTCAAGCAAGACTTATGAGCAAAGCTCTAAGAAAAGTAACTGGGCTTTTAAGTAAAATGAATTGTAC
AGTAATATTTATTAACCAAATTAGAATGAAAATAGGGATGACAGGTTATGGAAGTCCAGAAACAACAACTGGAGGAAATG
CACTTAAATTCTATTCATCAGTAAGACTTGATATTAGAAGAATTGCTACATTAAAACAAGGTGAAAACTCAATAGGAAAT
AGAGTAAAAGTAAAAGTTGTAAAAAATAAAGTTGCTGCTCCATTTAAACAAGCAGAGTTTGATATTATGTTTGGAGAAGG
TATCTCTAAAACTGGAGAAATAGTTGATTATGGTGTTAAACTTGATATTATTGATAAAGCTGGAGCTTGGTTTAGTTATG
GTGATACAAAAATAGGTCAAGGAAGAGAAAATGCAAAAGTATTTTTAAAAGATAATCCTGAAATTTCAAAAGAGATAGAA
GATAAGATTCTTAATTCAATGGGAATAAATGATGCTATTATCACAGGTGGAAGTGATGAAGAAGATACTGCATCTTTAGA
TGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A366MM60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.66

97.989

0.741
  recA Helicobacter pylori strain NCTC11637

76.347

95.977

0.733
  recA Helicobacter pylori 26695

76.048

95.977

0.73
  recA Acinetobacter baylyi ADP1

62.644

100

0.626
  recA Acinetobacter baumannii D1279779

62.899

99.138

0.624
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae MS11

62.974

98.563

0.621
  recA Neisseria gonorrhoeae strain FA1090

62.974

98.563

0.621
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.653

94.54

0.621
  recA Pseudomonas stutzeri DSM 10701

60.231

99.713

0.601
  recA Glaesserella parasuis strain SC1401

59.544

100

0.601
  recA Vibrio cholerae strain A1552

62.424

94.828

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.424

94.828

0.592
  recA Ralstonia pseudosolanacearum GMI1000

63.81

90.517

0.578
  recA Streptococcus mitis NCTC 12261

57.061

99.713

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

60.061

94.253

0.566
  recA Streptococcus mitis SK321

56.772

99.713

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

56.484

99.713

0.563
  recA Streptococcus pyogenes NZ131

58.788

94.828

0.557
  recA Streptococcus pneumoniae TIGR4

58.61

95.115

0.557
  recA Streptococcus pneumoniae D39

58.61

95.115

0.557
  recA Streptococcus pneumoniae R6

58.61

95.115

0.557
  recA Streptococcus pneumoniae Rx1

58.61

95.115

0.557
  recA Streptococcus mutans UA159

58.61

95.115

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.751

94.54

0.546
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.678

0.543