Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AFAEC_RS00430 Genome accession   NZ_CP053837
Coordinates   83009..84058 (+) Length   349 a.a.
NCBI ID   WP_026806789.1    Uniprot ID   -
Organism   Aliarcobacter faecis strain CCUG 66484     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 78009..89058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFAEC_RS00405 (AFAEC_0082) pseG 78868..79776 (-) 909 WP_027391046.1 UDP-2,4-diacetamido-2,4, 6-trideoxy-beta-L-altropyranose hydrolase -
  AFAEC_RS00410 (AFAEC_0083) pseF 79779..80495 (-) 717 WP_026806793.1 pseudaminic acid cytidylyltransferase -
  AFAEC_RS00415 (AFAEC_0084) pseC 80488..81618 (-) 1131 WP_026806792.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine transaminase -
  AFAEC_RS00420 (AFAEC_0085) pseB 81615..82607 (-) 993 WP_026806791.1 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) -
  AFAEC_RS00425 (AFAEC_0086) - 82713..82922 (+) 210 WP_026806790.1 hypothetical protein -
  AFAEC_RS00430 (AFAEC_0087) recA 83009..84058 (+) 1050 WP_026806789.1 recombinase RecA Machinery gene
  AFAEC_RS00435 (AFAEC_0088) eno 84206..85483 (+) 1278 WP_026806788.1 phosphopyruvate hydratase -
  AFAEC_RS00440 (AFAEC_0089) - 85516..85725 (+) 210 WP_225442381.1 septum formation initiator -
  AFAEC_RS00445 (AFAEC_0090) - 85722..86423 (+) 702 WP_026806786.1 AMIN domain-containing protein -
  AFAEC_RS00450 (AFAEC_0091) - 86444..87292 (-) 849 WP_026806785.1 biotin synthase -
  AFAEC_RS00455 (AFAEC_0092) - 87282..87794 (-) 513 WP_026806784.1 metallophosphoesterase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37251.63 Da        Isoelectric Point: 4.7227

>NTDB_id=448046 AFAEC_RS00430 WP_026806789.1 83009..84058(+) (recA) [Aliarcobacter faecis strain CCUG 66484]
MDENQKKSLELAIKQIDKAFGKGTLIRLGDKEVIPTEAISTGSLGLDLALGVGGLPKGRVIEIYGPESSGKTTLTLHAIA
EAQKAGGVCAFIDAEHALDVKYAKDIGVDTDNLLVSQPDFGEQALEILETVIRSGAVDLVVVDSVAALTPKVEIDGDMDD
QQVGVQARLMSKALRKVTGLLSKMNCTVIFINQIRMKIGMTGYGSPETTTGGNALKFYSSVRLDIRRIATLKQGENSIGN
RVKVKVVKNKVAAPFKQAEFDIMFGEGISKTGELVDYGVKLDIIDKAGAWFSYGDTKIGQGRENSKQFLLDNPTIAKEIE
DKILSSMGINDAIIAGGSDDGDEVAGLDD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=448046 AFAEC_RS00430 WP_026806789.1 83009..84058(+) (recA) [Aliarcobacter faecis strain CCUG 66484]
ATGGATGAAAACCAAAAAAAATCACTTGAACTTGCAATAAAACAAATAGATAAAGCTTTTGGAAAAGGGACATTAATAAG
ACTTGGAGATAAAGAGGTAATTCCCACAGAAGCTATAAGTACAGGTTCTTTAGGGCTTGATTTAGCTTTAGGTGTTGGAG
GACTTCCTAAAGGAAGAGTTATTGAAATCTATGGACCAGAGAGTTCAGGAAAAACAACTTTAACTTTACATGCTATTGCT
GAAGCTCAAAAAGCTGGAGGAGTTTGTGCCTTTATTGATGCCGAACATGCATTAGATGTAAAATATGCAAAAGATATAGG
TGTTGATACTGATAACTTACTAGTATCTCAACCAGATTTTGGAGAGCAAGCTTTAGAAATTCTTGAAACTGTTATTAGAA
GTGGAGCTGTTGATTTAGTAGTTGTGGACTCTGTTGCAGCTTTAACTCCAAAAGTTGAGATAGATGGTGATATGGATGAC
CAACAAGTAGGAGTTCAAGCAAGACTTATGAGTAAGGCTTTAAGAAAAGTAACAGGTCTTTTAAGCAAGATGAATTGTAC
TGTTATTTTTATCAATCAAATAAGAATGAAAATAGGAATGACTGGTTATGGAAGTCCAGAAACTACAACAGGTGGAAATG
CACTTAAATTCTACTCATCTGTAAGACTTGACATTAGAAGAATTGCAACACTTAAACAAGGTGAAAACTCTATAGGAAAT
AGAGTAAAAGTTAAAGTAGTAAAAAATAAAGTTGCAGCTCCATTTAAACAAGCTGAATTTGATATTATGTTTGGAGAGGG
TATTTCTAAAACAGGAGAGCTTGTGGATTATGGAGTAAAGCTTGATATTATTGATAAAGCAGGAGCTTGGTTTAGTTATG
GAGATACTAAAATAGGACAAGGTAGAGAGAATTCAAAACAATTTTTATTAGATAATCCTACTATTGCAAAAGAGATAGAG
GATAAAATTCTTAGCTCTATGGGTATAAATGATGCTATTATTGCTGGTGGAAGTGATGATGGTGATGAAGTTGCAGGACT
TGATGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.219

98.281

0.739
  recA Helicobacter pylori strain NCTC11637

75.749

95.702

0.725
  recA Helicobacter pylori 26695

75.449

95.702

0.722
  recA Acinetobacter baumannii D1279779

64.583

96.275

0.622
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.046

94.269

0.613
  recA Neisseria gonorrhoeae MS11

61.808

98.281

0.607
  recA Neisseria gonorrhoeae strain FA1090

61.808

98.281

0.607
  recA Neisseria gonorrhoeae MS11

61.808

98.281

0.607
  recA Acinetobacter baylyi ADP1

65.938

91.691

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.519

99.427

0.602
  recA Vibrio cholerae strain A1552

60.519

99.427

0.602
  recA Glaesserella parasuis strain SC1401

60.641

98.281

0.596
  recA Pseudomonas stutzeri DSM 10701

60.843

95.129

0.579
  recA Ralstonia pseudosolanacearum GMI1000

63.492

90.258

0.573
  recA Streptococcus mitis SK321

57.471

99.713

0.573
  recA Bacillus subtilis subsp. subtilis str. 168

59.451

93.983

0.559
  recA Streptococcus pyogenes NZ131

58.788

94.556

0.556
  recA Streptococcus mitis NCTC 12261

58.61

94.842

0.556
  recA Streptococcus pneumoniae Rx1

58.61

94.842

0.556
  recA Streptococcus pneumoniae D39

58.61

94.842

0.556
  recA Streptococcus pneumoniae R6

58.61

94.842

0.556
  recA Streptococcus pneumoniae TIGR4

58.61

94.842

0.556
  recA Streptococcus mutans UA159

58.308

94.842

0.553
  recA Latilactobacillus sakei subsp. sakei 23K

58.182

94.556

0.55
  recA Lactococcus lactis subsp. cremoris KW2

57.447

94.269

0.542
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.975

93.41

0.542