Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CSE_RS03465 Genome accession   NC_017096
Coordinates   706473..707489 (+) Length   338 a.a.
NCBI ID   WP_014453258.1    Uniprot ID   A0A7U6JG06
Organism   Caldisericum exile AZM16c01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 701473..712489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE_RS03445 (CSE_07250) lon 701564..703903 (+) 2340 WP_014453254.1 endopeptidase La -
  CSE_RS03450 (CSE_07260) - 703881..704612 (+) 732 WP_014453255.1 helix-turn-helix domain-containing protein -
  CSE_RS03455 (CSE_07270) rimO 704609..705898 (+) 1290 WP_014453256.1 30S ribosomal protein S12 methylthiotransferase RimO -
  CSE_RS03460 (CSE_07280) thpR 705895..706437 (+) 543 WP_014453257.1 RNA 2',3'-cyclic phosphodiesterase -
  CSE_RS03465 (CSE_07290) recA 706473..707489 (+) 1017 WP_014453258.1 recombinase RecA Machinery gene
  CSE_RS03470 (CSE_07300) - 707452..707895 (+) 444 WP_014453259.1 regulatory protein RecX -
  CSE_RS03475 (CSE_07310) rny 707901..709448 (+) 1548 WP_014453260.1 ribonuclease Y -
  CSE_RS03480 (CSE_07320) uvrC 709438..711075 (+) 1638 WP_050981321.1 excinuclease ABC subunit UvrC -
  CSE_RS03485 (CSE_07330) - 711065..711418 (+) 354 WP_014453262.1 phage holin family protein -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 36684.40 Da        Isoelectric Point: 6.1422

>NTDB_id=44804 CSE_RS03465 WP_014453258.1 706473..707489(+) (recA) [Caldisericum exile AZM16c01]
MANTENDKEQALKLAMMQVEKEYGKGSVMRLGDKKASLSIEVIPTGIYSLDLALGVGGFPRGRIIEIFGPEGSGKTTLAL
EAIANAQRMGGKALFVDVEHAFSPEYAKSLGVNIDDLIVSQPDYAEQALDIIDIFVRSGAVDIVVLDSVAALVPKAELEG
DMGDSFMGVQARLMSQALRKLAGTINKSKTCMIFINQLREKIGVVFGNPEVTPGGRALKFYASVRLDVRRVESISGDGAD
KGNRIRIKVVKNKVAPPYKEAIVDLIFGEGISRLGDLFDVAVENAIVKKSGSFFSYGDIKLGQGRDNAIKLLQSNEELLN
KIKKELDEKLFAKKEEAQ

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=44804 CSE_RS03465 WP_014453258.1 706473..707489(+) (recA) [Caldisericum exile AZM16c01]
ATGGCAAATACTGAAAACGACAAGGAACAAGCCCTTAAACTTGCAATGATGCAAGTTGAGAAGGAGTATGGAAAAGGTTC
AGTAATGAGACTTGGCGATAAAAAAGCCAGTTTAAGTATAGAGGTAATTCCAACCGGTATTTATTCTCTTGACCTTGCCT
TAGGTGTAGGAGGCTTCCCGAGGGGCCGTATCATTGAAATTTTTGGACCAGAGGGAAGTGGAAAAACCACTCTTGCTCTC
GAGGCGATTGCAAATGCCCAGAGAATGGGCGGAAAGGCGTTATTTGTGGATGTAGAACATGCGTTTTCTCCTGAATATGC
GAAAAGTCTTGGCGTAAATATAGACGATCTTATCGTTTCGCAACCTGATTATGCAGAACAGGCACTTGATATTATAGACA
TTTTTGTAAGGTCTGGTGCTGTTGACATTGTAGTACTTGATTCTGTTGCTGCCTTAGTACCCAAAGCGGAGTTAGAGGGA
GACATGGGAGACTCCTTTATGGGAGTACAAGCAAGACTTATGTCTCAAGCATTGAGAAAACTTGCAGGCACAATAAACAA
ATCGAAAACTTGCATGATTTTTATTAACCAGTTGCGTGAGAAAATCGGAGTTGTGTTTGGTAATCCTGAAGTAACCCCAG
GTGGACGTGCGCTTAAATTCTATGCTTCAGTTAGACTTGATGTAAGACGTGTTGAATCAATTTCTGGCGATGGTGCCGAC
AAAGGTAATAGAATTAGAATTAAGGTTGTAAAAAATAAAGTTGCGCCGCCTTATAAAGAAGCAATTGTTGATCTTATATT
CGGTGAAGGTATTTCGCGACTTGGAGATTTATTTGATGTTGCAGTAGAAAATGCTATTGTCAAAAAAAGTGGATCTTTCT
TCTCATATGGTGACATCAAACTTGGACAAGGAAGAGATAATGCGATAAAATTGTTGCAGTCGAATGAAGAACTACTCAAT
AAGATAAAGAAAGAATTAGATGAAAAACTCTTTGCAAAGAAAGAAGAAGCCCAGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(10-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6JG06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.475

100

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

60.494

95.858

0.58
  recA Lactococcus lactis subsp. cremoris KW2

58.182

97.633

0.568
  recA Latilactobacillus sakei subsp. sakei 23K

60

94.675

0.568
  recA Streptococcus pneumoniae R6

57.927

97.041

0.562
  recA Streptococcus pneumoniae TIGR4

57.927

97.041

0.562
  recA Streptococcus pneumoniae Rx1

57.927

97.041

0.562
  recA Streptococcus pneumoniae D39

57.927

97.041

0.562
  recA Neisseria gonorrhoeae MS11

58.104

96.746

0.562
  recA Vibrio cholerae strain A1552

58.104

96.746

0.562
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.104

96.746

0.562
  recA Neisseria gonorrhoeae MS11

58.104

96.746

0.562
  recA Neisseria gonorrhoeae strain FA1090

58.104

96.746

0.562
  recA Streptococcus mitis SK321

58.333

95.858

0.559
  recA Streptococcus mitis NCTC 12261

58.333

95.858

0.559
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.575

96.746

0.547
  recA Streptococcus mutans UA159

57.632

94.97

0.547
  recA Streptococcus pyogenes NZ131

56.615

96.154

0.544
  recA Glaesserella parasuis strain SC1401

56.656

95.562

0.541
  recA Helicobacter pylori 26695

54.518

98.225

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.918

94.083

0.536
  recA Helicobacter pylori strain NCTC11637

54.217

98.225

0.533
  recA Pseudomonas stutzeri DSM 10701

55.046

96.746

0.533
  recA Acinetobacter baumannii D1279779

54.268

97.041

0.527
  recA Acinetobacter baylyi ADP1

54.103

97.337

0.527
  recA Ralstonia pseudosolanacearum GMI1000

56.41

92.308

0.521

Multiple sequence alignment