Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCVT_RS08555 Genome accession   NZ_CP053826
Coordinates   1747677..1748771 (-) Length   364 a.a.
NCBI ID   WP_018135915.1    Uniprot ID   -
Organism   Campylobacter curvus strain ATCC 35224     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1742677..1753771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCVT_RS08530 (CCVT_1699) - 1742711..1744099 (+) 1389 WP_018135919.1 GntP family permease -
  CCVT_RS08535 (CCVT_1700) - 1744096..1745229 (+) 1134 WP_018135918.1 glycerate kinase -
  CCVT_RS08540 (CCVT_1701) - 1745265..1746149 (-) 885 WP_018135917.1 hypothetical protein -
  CCVT_RS08545 (CCVT_1702) - 1746155..1746433 (-) 279 WP_009650923.1 hypothetical protein -
  CCVT_RS08550 (CCVT_1703) eno 1746430..1747680 (-) 1251 WP_018135916.1 phosphopyruvate hydratase -
  CCVT_RS08555 (CCVT_1704) recA 1747677..1748771 (-) 1095 WP_018135915.1 recombinase RecA Machinery gene
  CCVT_RS08560 (CCVT_1705) - 1748861..1749349 (-) 489 WP_018135914.1 hypothetical protein -
  CCVT_RS08565 (CCVT_1706) - 1749358..1750131 (-) 774 WP_018135913.1 UDP-N-acetylmuramate dehydrogenase -
  CCVT_RS08570 (CCVT_1707) fliQ 1750128..1750397 (-) 270 WP_026175387.1 flagellar biosynthesis protein FliQ -
  CCVT_RS08575 (CCVT_1708) - 1750394..1751266 (-) 873 WP_018135912.1 menaquinone biosynthesis family protein -
  CCVT_RS08580 (CCVT_1709) - 1751556..1752653 (-) 1098 WP_018135911.1 nicotinate phosphoribosyltransferase -
  CCVT_RS10140 (CCVT_1710) - 1752787..1753179 (-) 393 WP_169765189.1 helix-hairpin-helix domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39395.16 Da        Isoelectric Point: 5.2227

>NTDB_id=447949 CCVT_RS08555 WP_018135915.1 1747677..1748771(-) (recA) [Campylobacter curvus strain ATCC 35224]
MAKEKDSDKKLVPLELEADKKKAIDLALKQIDKAFGKGTLLRLGDKQVEPIESIPTGSIGLDLALGIGGVPKGRIIEIYG
PESSGKTTLTLHIIAECQKAGGICAFVDAEHALDVKYASNLGVDTDNLYVSQPDFGEQALEIVETLARTGAVDLIVVDSV
AALTPKSEVEGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNEEPIGNRTKAKVVKNKVAPPFKVAEFDIMYGEGISREGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPQTADEIVASIKGSMGIDHLLTSGKDDDDDKQTGEEE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447949 CCVT_RS08555 WP_018135915.1 1747677..1748771(-) (recA) [Campylobacter curvus strain ATCC 35224]
ATGGCAAAAGAAAAAGACAGCGACAAAAAACTAGTCCCTTTGGAGCTTGAGGCCGACAAGAAAAAGGCCATCGACCTGGC
TTTGAAGCAGATCGATAAAGCATTTGGCAAAGGTACGCTTTTAAGGCTTGGCGATAAACAAGTCGAGCCGATAGAGAGCA
TCCCCACCGGCTCGATAGGGCTTGATCTAGCACTTGGTATAGGCGGCGTGCCAAAGGGCAGGATAATCGAAATTTACGGG
CCCGAGAGTTCGGGTAAGACGACGCTTACTTTACATATCATCGCCGAGTGCCAAAAGGCCGGAGGGATCTGCGCGTTCGT
CGATGCCGAGCACGCCCTTGATGTAAAATACGCTTCGAATTTAGGCGTGGATACGGACAACCTTTACGTCTCTCAGCCTG
ATTTTGGCGAGCAGGCTCTTGAGATCGTAGAGACCTTAGCCAGGACGGGAGCGGTCGATCTCATCGTAGTCGATAGCGTC
GCCGCACTTACGCCAAAGAGCGAGGTAGAGGGTGACATGGGCGATCAGCACGTGGGGCTTCAGGCGCGTTTGATGAGCCA
GGCGCTAAGAAAGCTCACCGGCATACTAAGCAAGATGAAAACTACGGTCATATTTATCAACCAGATCCGCATGAAGATCG
GCATGATGGGTTATGGCACGCCTGAGACCACCACAGGCGGAAATGCACTAAAATTTTACTCCTCCGTTCGTATCGACGTA
CGAAAGATCGCTACGTTAAAGCAAAATGAAGAGCCTATCGGCAACCGCACGAAAGCTAAAGTCGTCAAAAACAAGGTCGC
GCCTCCGTTTAAGGTCGCGGAATTTGACATCATGTATGGCGAGGGCATCAGCCGCGAAGGCGAGATAATAGACTACGGCG
TCAAGCTCGATATCATAGATAAAAGCGGCGCGTGGTTTAGCTACAAGGCCGAAAAGCTCGGACAAGGCAGAGAAAACGCG
AAAGCCTATTTGAAAGAGCATCCGCAAACAGCCGATGAGATCGTCGCCTCTATCAAGGGCTCGATGGGCATAGACCATTT
GCTAACCAGCGGTAAAGACGATGATGATGATAAACAAACAGGAGAGGAAGAATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

81.471

93.407

0.761
  recA Helicobacter pylori 26695

79.394

90.659

0.72
  recA Helicobacter pylori strain NCTC11637

79.091

90.659

0.717
  recA Neisseria gonorrhoeae MS11

63.873

95.055

0.607
  recA Neisseria gonorrhoeae MS11

63.873

95.055

0.607
  recA Neisseria gonorrhoeae strain FA1090

63.873

95.055

0.607
  recA Glaesserella parasuis strain SC1401

59.128

100

0.596
  recA Acinetobacter baylyi ADP1

61.318

95.879

0.588
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.138

89.835

0.585
  recA Bacillus subtilis subsp. subtilis str. 168

64.438

90.385

0.582
  recA Acinetobacter baumannii D1279779

62.13

92.857

0.577
  recA Pseudomonas stutzeri DSM 10701

62.691

89.835

0.563
  recA Streptococcus pneumoniae D39

58.671

95.055

0.558
  recA Streptococcus pneumoniae TIGR4

58.671

95.055

0.558
  recA Streptococcus pneumoniae Rx1

58.671

95.055

0.558
  recA Streptococcus pneumoniae R6

58.671

95.055

0.558
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.291

86.813

0.549
  recA Vibrio cholerae strain A1552

63.291

86.813

0.549
  recA Streptococcus pyogenes NZ131

60.79

90.385

0.549
  recA Ralstonia pseudosolanacearum GMI1000

63.057

86.264

0.544
  recA Streptococcus mutans UA159

56.286

96.154

0.541
  recA Lactococcus lactis subsp. cremoris KW2

56.609

95.604

0.541
  recA Latilactobacillus sakei subsp. sakei 23K

59.816

89.56

0.536
  recA Streptococcus mitis NCTC 12261

58.912

90.934

0.536
  recA Streptococcus mitis SK321

58.61

90.934

0.533
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.006

90.934

0.527