Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPY13_RS11420 Genome accession   NZ_CP053796
Coordinates   2523296..2524360 (-) Length   354 a.a.
NCBI ID   WP_000344154.1    Uniprot ID   A0A0K9UMZ1
Organism   Vibrio cholerae strain SL4G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2518296..2529360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS11405 (HPY13_11405) - 2518559..2519746 (-) 1188 WP_175249809.1 aspartate kinase -
  HPY13_RS11410 (HPY13_11410) alaS 2519950..2522532 (-) 2583 WP_094392738.1 alanine--tRNA ligase -
  HPY13_RS11415 (HPY13_11415) recX 2522705..2523163 (-) 459 WP_000006850.1 recombination regulator RecX -
  HPY13_RS11420 (HPY13_11420) recA 2523296..2524360 (-) 1065 WP_000344154.1 recombinase RecA Machinery gene
  HPY13_RS11425 (HPY13_11425) pncC 2524494..2525000 (-) 507 WP_094392739.1 nicotinamide-nucleotide amidase -
  HPY13_RS11430 (HPY13_11430) - 2525167..2526297 (-) 1131 WP_002051153.1 sulfate/molybdate ABC transporter ATP-binding protein -
  HPY13_RS11435 (HPY13_11435) cysW 2526294..2527157 (-) 864 WP_094392740.1 sulfate ABC transporter permease subunit CysW -
  HPY13_RS11440 (HPY13_11440) cysT 2527168..2528019 (-) 852 WP_000531808.1 sulfate/thiosulfate ABC transporter permease CysT -
  HPY13_RS11445 (HPY13_11445) cysP 2528096..2529097 (-) 1002 WP_001079834.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38249.92 Da        Isoelectric Point: 5.0766

>NTDB_id=447381 HPY13_RS11420 WP_000344154.1 2523296..2524360(-) (recA) [Vibrio cholerae strain SL4G]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLIAETSSAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=447381 HPY13_RS11420 WP_000344154.1 2523296..2524360(-) (recA) [Vibrio cholerae strain SL4G]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTATCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAACTGGG
CGTCAATATCGATGAGCTACTGGTTTCTCAGCCTGATACCGGCGAGCAAGCGCTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTGATTGTTGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCGATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAAGAAGCGAACACTCAGATCATGTATGGCCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATAGCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UMZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

100

100

1
  recA Vibrio cholerae O1 biovar El Tor strain E7946

100

100

1
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Acinetobacter baylyi ADP1

70.69

98.305

0.695
  recA Glaesserella parasuis strain SC1401

69.516

99.153

0.689
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae strain FA1090

66.949

100

0.669
  recA Ralstonia pseudosolanacearum GMI1000

69.659

91.243

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.525

0.59
  recA Helicobacter pylori strain NCTC11637

61.31

94.915

0.582
  recA Helicobacter pylori 26695

61.012

94.915

0.579
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.3

88.418

0.551