Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPQ68_RS11185 Genome accession   NZ_CP053748
Coordinates   2493567..2494649 (+) Length   360 a.a.
NCBI ID   WP_176348004.1    Uniprot ID   -
Organism   Massilia sp. erpn     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2488567..2499649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPQ68_RS11165 (HPQ68_11120) - 2488855..2490915 (-) 2061 WP_255757741.1 sodium:solute symporter family protein -
  HPQ68_RS11170 (HPQ68_11125) - 2490912..2491184 (-) 273 WP_255757742.1 DUF4212 domain-containing protein -
  HPQ68_RS11175 (HPQ68_11130) - 2491177..2492715 (-) 1539 WP_374040913.1 sensor histidine kinase N-terminal domain-containing protein -
  HPQ68_RS11180 (HPQ68_11135) - 2492712..2493404 (-) 693 WP_255757743.1 response regulator transcription factor -
  HPQ68_RS11185 (HPQ68_11140) recA 2493567..2494649 (+) 1083 WP_176348004.1 recombinase RecA Machinery gene
  HPQ68_RS11190 (HPQ68_11145) recX 2494728..2495189 (+) 462 WP_255757744.1 recombination regulator RecX -
  HPQ68_RS11195 (HPQ68_11150) - 2495366..2495941 (+) 576 WP_255757745.1 DUF2889 domain-containing protein -
  HPQ68_RS11200 (HPQ68_11155) sucC 2496022..2497188 (+) 1167 WP_255757746.1 ADP-forming succinate--CoA ligase subunit beta -
  HPQ68_RS11205 (HPQ68_11160) sucD 2497202..2498083 (+) 882 WP_255757747.1 succinate--CoA ligase subunit alpha -
  HPQ68_RS11210 (HPQ68_11165) - 2498152..2498787 (+) 636 WP_255757748.1 FHA domain-containing protein -
  HPQ68_RS11215 (HPQ68_11170) - 2499001..2499471 (+) 471 WP_050411360.1 pilin -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 38362.85 Da        Isoelectric Point: 5.3503

>NTDB_id=446888 HPQ68_RS11185 WP_176348004.1 2493567..2494649(+) (recA) [Massilia sp. erpn]
MDDKKAVVPASEKAKALAAALAQIEKQFGKGSVMRMDASAPIEEVQTVSTGSLGLDIALGVGGLPRGRVVEIYGPESSGK
TTLTLQTIAEMQKIGGTCAFIDAEHALDVGYAQKLGVNLHELLISQPDTGEQALEICDALVRSGSVDMVVVDSVAALTPR
AEIEGDMGDSLPGLQARLMSQALRKLTGSINRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGSIK
SGDEVIGNETKVKVVKNKIAPPFKEAHFDILYGEGTSREGEIIDLGVEAKIVEKSGSWYSYNGERIGQGKDNARIYLKER
PALAREIENKVRASLGVRELPPASGDDDGDAPAPKLKAVD

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=446888 HPQ68_RS11185 WP_176348004.1 2493567..2494649(+) (recA) [Massilia sp. erpn]
ATGGACGATAAAAAAGCTGTAGTACCGGCATCGGAAAAAGCCAAGGCGCTGGCCGCCGCGCTGGCTCAGATTGAGAAGCA
GTTCGGCAAAGGCTCCGTGATGCGCATGGACGCATCGGCGCCGATCGAGGAAGTGCAGACCGTCTCCACCGGCTCCCTGG
GCCTGGATATCGCGCTGGGCGTGGGTGGCCTGCCGCGCGGCCGCGTGGTGGAAATCTACGGTCCCGAATCGTCCGGCAAG
ACCACGCTGACCCTGCAGACCATCGCCGAAATGCAGAAAATCGGCGGCACCTGCGCCTTTATCGACGCCGAACACGCGCT
GGACGTGGGTTATGCGCAGAAACTGGGCGTGAATCTGCACGAGCTGCTGATTTCCCAGCCCGACACCGGCGAACAGGCGC
TGGAAATCTGCGACGCCCTGGTGCGCTCCGGCAGCGTCGACATGGTGGTGGTGGACTCGGTGGCGGCCCTGACCCCGCGC
GCCGAGATCGAAGGCGATATGGGCGACTCCCTGCCTGGCCTGCAAGCGCGTCTGATGTCGCAAGCGCTGCGCAAGCTGAC
CGGCTCGATCAACCGCACCAATACCCTGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAGCC
CGGAAACCACGACCGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCACCGGCTCGATCAAG
TCGGGCGACGAGGTGATCGGCAACGAAACCAAGGTCAAAGTGGTCAAGAACAAGATCGCGCCGCCATTCAAGGAAGCCCA
CTTCGACATTCTGTATGGCGAAGGCACGTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGGAAGCGAAGATCGTCGAGA
AATCCGGCTCCTGGTACAGCTATAACGGCGAACGCATCGGCCAGGGCAAGGACAACGCCCGCATCTACCTGAAAGAGCGT
CCAGCACTGGCGCGCGAGATCGAGAACAAGGTGCGCGCTTCGCTCGGCGTGCGCGAACTGCCGCCGGCCAGCGGCGACGA
CGACGGCGATGCGCCGGCGCCGAAGCTGAAGGCCGTCGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.036

93.333

0.775
  recA Neisseria gonorrhoeae MS11

71.387

96.111

0.686
  recA Neisseria gonorrhoeae MS11

71.387

96.111

0.686
  recA Neisseria gonorrhoeae strain FA1090

71.387

96.111

0.686
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.065

89.722

0.656
  recA Vibrio cholerae strain A1552

73.065

89.722

0.656
  recA Pseudomonas stutzeri DSM 10701

72.136

89.722

0.647
  recA Glaesserella parasuis strain SC1401

70.122

91.111

0.639
  recA Acinetobacter baylyi ADP1

71.207

89.722

0.639
  recA Acinetobacter baumannii D1279779

70.898

89.722

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.964

92.222

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

66.055

90.833

0.6
  recA Helicobacter pylori 26695

64.742

91.389

0.592
  recA Helicobacter pylori strain NCTC11637

64.438

91.389

0.589
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

94.167

0.589
  recA Latilactobacillus sakei subsp. sakei 23K

63.939

91.667

0.586
  recA Streptococcus pyogenes NZ131

62.918

91.389

0.575
  recA Lactococcus lactis subsp. cremoris KW2

61.934

91.944

0.569
  recA Streptococcus mutans UA159

61.747

92.222

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.691

90.833

0.569
  recA Streptococcus pneumoniae Rx1

61.631

91.944

0.567
  recA Streptococcus pneumoniae D39

61.631

91.944

0.567
  recA Streptococcus pneumoniae R6

61.631

91.944

0.567
  recA Streptococcus pneumoniae TIGR4

61.631

91.944

0.567
  recA Streptococcus mitis SK321

61.329

91.944

0.564
  recA Streptococcus mitis NCTC 12261

61.329

91.944

0.564