Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FX982_RS12945 Genome accession   NZ_CP053746
Coordinates   2885860..2886924 (+) Length   354 a.a.
NCBI ID   WP_065989790.1    Uniprot ID   -
Organism   Pseudomonas graminis strain PgKB30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2880860..2891924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FX982_RS12930 (FX982_02589) fdxA 2881647..2881970 (-) 324 WP_065989796.1 ferredoxin FdxA -
  FX982_RS12935 (FX982_02590) mutS 2882210..2884777 (-) 2568 WP_172613047.1 DNA mismatch repair protein MutS -
  FX982_RS12940 (FX982_02591) - 2885274..2885774 (+) 501 WP_172610994.1 CinA family protein -
  FX982_RS12945 (FX982_02592) recA 2885860..2886924 (+) 1065 WP_065989790.1 recombinase RecA Machinery gene
  FX982_RS12950 (FX982_02593) recX 2886933..2887400 (+) 468 WP_172610996.1 recombination regulator RecX -
  FX982_RS12955 (FX982_02594) - 2887449..2888564 (-) 1116 WP_172610998.1 LOG family protein -
  FX982_RS12960 (FX982_02595) - 2888942..2889367 (-) 426 WP_172610999.1 quorum-sensing-regulated virulence factor family protein -
  FX982_RS12965 (FX982_02596) - 2889586..2890317 (+) 732 WP_172613048.1 tRNA-uridine aminocarboxypropyltransferase -
  FX982_RS12970 (FX982_02597) - 2890376..2891260 (-) 885 WP_172611000.1 DMT family transporter -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37749.29 Da        Isoelectric Point: 5.5202

>NTDB_id=446834 FX982_RS12945 WP_065989790.1 2885860..2886924(+) (recA) [Pseudomonas graminis strain PgKB30]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
EAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKTANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYRNGEIIDLGVLHGLLEKSGAWYSYQGSKIGQGKANSAKFLADNPEIGTTLER
QIREKLLTAAPDVKAQSSRVAADDVAEVEADADI

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=446834 FX982_RS12945 WP_065989790.1 2885860..2886924(+) (recA) [Pseudomonas graminis strain PgKB30]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCTTGGGTCAGATCGAGCGTCAATTCGGCAAAGGTGCCGTAATGCG
CATGGGTGACCATGATCGCCAGGCTATTCCTGCTATCTCCACCGGTTCGCTGGGTCTCGATATCGCACTTGGTATCGGTG
GCCTGCCAAAAGGCCGGATCGTTGAAATCTACGGCCCGGAATCTTCGGGTAAGACCACCCTCACTCTGTCCGTCATCGCA
GAAGCCCAGAAAATGGGCGCCACCTGCGCATTCGTCGACGCCGAGCACGCGCTCGATCCAGAGTACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTCTCCCAGCCAGACACCGGCGAACAGGCCCTCGAAATCACCGACATGCTGGTGCGTT
CGAACGCAATCGACGTCATCGTCGTCGACTCCGTTGCCGCCCTCGTTCCGAAGGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTCGGCCTGCAAGCCCGATTGATGTCCCAGGCGCTGCGTAAGATCACCGGTAACATCAAGACTGCCAACTGCCT
CGTTATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACAACAACCGGTGGTAACGCCC
TGAAGTTCTACGCGTCGGTCCGTCTGGACATCCGCCGTACAGGCGCGGTCAAGGAAGGCGACGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAGGTGGCCCCGCCGTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGCAT
CTACCGTAACGGCGAGATCATCGATCTCGGCGTGCTGCACGGTCTGCTGGAGAAATCCGGCGCCTGGTACAGCTACCAGG
GCAGCAAGATCGGTCAGGGTAAAGCCAACTCCGCGAAGTTCCTGGCGGACAACCCGGAAATCGGCACCACCCTCGAACGG
CAGATTCGCGAGAAGCTGCTGACGGCAGCGCCTGATGTGAAGGCCCAGTCGTCCCGCGTAGCGGCAGACGATGTGGCTGA
AGTTGAAGCTGACGCGGATATCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

87.853

100

0.879
  recA Acinetobacter baylyi ADP1

74.359

99.153

0.737
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.754

97.458

0.709
  recA Vibrio cholerae strain A1552

72.754

97.458

0.709
  recA Acinetobacter baumannii D1279779

75

93.785

0.703
  recA Ralstonia pseudosolanacearum GMI1000

71.045

94.633

0.672
  recA Glaesserella parasuis strain SC1401

68.588

98.023

0.672
  recA Neisseria gonorrhoeae MS11

72.222

91.525

0.661
  recA Neisseria gonorrhoeae MS11

72.222

91.525

0.661
  recA Neisseria gonorrhoeae strain FA1090

72.222

91.525

0.661
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

92.373

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.174

94.35

0.596
  recA Helicobacter pylori strain NCTC11637

62.997

92.373

0.582
  recA Helicobacter pylori 26695

62.385

92.373

0.576
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.678

0.565
  recA Streptococcus pneumoniae Rx1

56.125

99.153

0.556
  recA Streptococcus pneumoniae D39

56.125

99.153

0.556
  recA Streptococcus pneumoniae R6

56.125

99.153

0.556
  recA Streptococcus pneumoniae TIGR4

56.125

99.153

0.556
  recA Streptococcus mutans UA159

60.308

91.808

0.554
  recA Streptococcus mitis SK321

56

98.87

0.554
  recA Streptococcus pyogenes NZ131

55.211

100

0.554
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

90.678

0.54
  recA Streptococcus mitis NCTC 12261

59.133

91.243

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.748

92.09

0.523
  recA Lactococcus lactis subsp. cremoris KW2

56.347

91.243

0.514