Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HNS37_RS14085 Genome accession   NZ_CP053681
Coordinates   3116239..3117306 (+) Length   355 a.a.
NCBI ID   WP_060556587.1    Uniprot ID   -
Organism   Proteus mirabilis strain M3-1-17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3111239..3122306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNS37_RS14065 aroL 3111615..3112127 (+) 513 WP_004244785.1 shikimate kinase AroL -
  HNS37_RS14070 aas 3112231..3114390 (+) 2160 WP_081045301.1 bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase -
  HNS37_RS14075 lplT 3114390..3115592 (+) 1203 WP_060556585.1 lysophospholipid transporter LplT -
  HNS37_RS14080 pncC 3115625..3116131 (+) 507 WP_060556586.1 nicotinamide-nucleotide amidase -
  HNS37_RS14085 recA 3116239..3117306 (+) 1068 WP_060556587.1 recombinase RecA Machinery gene
  HNS37_RS14090 alaS 3118207..3120834 (+) 2628 WP_060556588.1 alanine--tRNA ligase -
  HNS37_RS14095 csrA 3121052..3121240 (+) 189 WP_004244778.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38147.34 Da        Isoelectric Point: 5.0505

>NTDB_id=446271 HNS37_RS14085 WP_060556587.1 3116239..3117306(+) (recA) [Proteus mirabilis strain M3-1-17]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMNVETISTGSLSLDVALGAGGLPRGRIVEIYGPESSGKTTLTLQV
IASAQREGKICAFIDAEHALDPIYAQKLGVDIDNLLCSQPDTGEQALEICDALSRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHVGLAARMMSQAMRKLAGNLKNSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGSVKNGDEVIG
SETRVKVVKNKVAAPFKQAEFQIMYGEGINTYGELIDLGVKHKLVEKAGAWYSYNGEKIGQGKANATNYLKEHPEMYNEL
NTKLREMLLNHAGEFTSAADFAGEGSDSDADDTKE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=446271 HNS37_RS14085 WP_060556587.1 3116239..3117306(+) (recA) [Proteus mirabilis strain M3-1-17]
ATGGCTATTGATGAAAACAAACAAAAAGCATTGGCCGCAGCACTTGGTCAAATTGAAAAGCAATTTGGTAAAGGTTCTAT
CATGCGTCTGGGCGAAGACCGTTCCATGAATGTAGAAACTATCTCTACAGGCTCTTTATCATTAGACGTTGCTTTAGGTG
CGGGTGGATTGCCACGTGGCCGTATTGTTGAAATCTATGGCCCTGAATCTTCTGGTAAAACAACGCTGACCCTACAAGTT
ATTGCATCTGCTCAGCGTGAAGGAAAAATTTGTGCATTTATTGATGCTGAACATGCATTAGACCCAATTTATGCTCAAAA
GCTAGGTGTCGATATCGATAATCTACTCTGCTCTCAACCTGACACTGGTGAACAAGCACTGGAAATTTGTGATGCATTAT
CTCGCTCTGGTGCGGTCGATGTTATTGTCGTGGACTCTGTGGCAGCATTAACACCAAAAGCTGAAATTGAAGGTGAAATT
GGTGATTCACACGTTGGTTTAGCCGCACGTATGATGAGCCAAGCTATGCGTAAACTCGCGGGTAACCTTAAAAACTCTAA
CACACTACTGATTTTTATTAACCAAATTCGTATGAAAATCGGTGTTATGTTTGGTAACCCAGAAACCACGACCGGTGGTA
ATGCGCTTAAATTCTATGCTTCTGTTCGTTTAGACATTCGTCGCATTGGCTCTGTCAAAAATGGTGATGAAGTCATTGGT
AGTGAGACTCGCGTTAAAGTTGTTAAAAATAAAGTGGCTGCACCCTTTAAACAAGCTGAATTCCAAATCATGTACGGTGA
AGGTATTAATACCTATGGCGAACTGATTGATTTAGGTGTTAAACATAAGCTAGTAGAGAAAGCAGGTGCTTGGTATAGCT
ACAATGGTGAAAAAATTGGTCAAGGTAAAGCGAACGCAACCAATTACTTAAAAGAACACCCTGAAATGTACAATGAGTTA
AACACTAAATTACGTGAAATGTTGTTAAATCATGCTGGTGAATTCACAAGTGCTGCGGATTTTGCAGGTGAAGGATCAGA
TAGTGATGCTGACGACACAAAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

81.05

96.62

0.783
  recA Vibrio cholerae strain A1552

81.05

96.62

0.783
  recA Pseudomonas stutzeri DSM 10701

72.046

97.746

0.704
  recA Acinetobacter baylyi ADP1

70.725

97.183

0.687
  recA Glaesserella parasuis strain SC1401

67.614

99.155

0.67
  recA Acinetobacter baumannii D1279779

72.171

92.113

0.665
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae MS11

69.325

91.831

0.637
  recA Neisseria gonorrhoeae strain FA1090

69.325

91.831

0.637
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.606

0.625
  recA Streptococcus pneumoniae R6

62.13

95.211

0.592
  recA Streptococcus pneumoniae Rx1

62.13

95.211

0.592
  recA Streptococcus pneumoniae D39

62.13

95.211

0.592
  recA Streptococcus pneumoniae TIGR4

62.13

95.211

0.592
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

96.62

0.589
  recA Helicobacter pylori 26695

63.609

92.113

0.586
  recA Helicobacter pylori strain NCTC11637

63.303

92.113

0.583
  recA Lactococcus lactis subsp. cremoris KW2

63.385

91.549

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

64.174

90.423

0.58
  recA Streptococcus pyogenes NZ131

63.077

91.549

0.577
  recA Streptococcus mitis NCTC 12261

63.158

90.986

0.575
  recA Streptococcus mitis SK321

63.158

90.986

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

62.769

91.549

0.575
  recA Streptococcus mutans UA159

61.846

91.549

0.566
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.517

93.239

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.813

90.423

0.541