Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | HO397_RS12830 | Genome accession | NZ_CP053601 |
| Coordinates | 2633134..2634195 (-) | Length | 353 a.a. |
| NCBI ID | WP_000963143.1 | Uniprot ID | A0AAV3H3S5 |
| Organism | Escherichia coli BL21 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2592984..2641205 | 2633134..2634195 | within | 0 |
Gene organization within MGE regions
Location: 2592984..2641205
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HO397_RS12610 (HO397_12610) | - | 2592984..2594213 (+) | 1230 | WP_001062342.1 | integrase domain-containing protein | - |
| HO397_RS12615 (HO397_12615) | - | 2594496..2596052 (+) | 1557 | WP_000135616.1 | recombinase family protein | - |
| HO397_RS12620 (HO397_12620) | - | 2596042..2596938 (+) | 897 | WP_000936465.1 | ParB/RepB/Spo0J family partition protein | - |
| HO397_RS12625 (HO397_12625) | - | 2596935..2597831 (+) | 897 | WP_000614784.1 | plasmid partitioning protein RepB C-terminal domain-containing protein | - |
| HO397_RS12630 (HO397_12630) | - | 2598230..2598927 (+) | 698 | WP_094096600.1 | IS1-like element IS1A family transposase | - |
| HO397_RS12635 (HO397_12635) | glaH | 2599233..2600210 (+) | 978 | WP_000993087.1 | glutarate dioxygenase GlaH | - |
| HO397_RS12640 (HO397_12640) | lhgO | 2600229..2601497 (+) | 1269 | WP_000271963.1 | L-2-hydroxyglutarate oxidase | - |
| HO397_RS12645 (HO397_12645) | gabD | 2601520..2602968 (+) | 1449 | WP_000772820.1 | NADP-dependent succinate-semialdehyde dehydrogenase | - |
| HO397_RS12650 (HO397_12650) | gabT | 2602982..2604262 (+) | 1281 | WP_000097642.1 | 4-aminobutyrate--2-oxoglutarate transaminase | - |
| HO397_RS12655 (HO397_12655) | gabP | 2604573..2605973 (+) | 1401 | WP_001301367.1 | GABA permease | - |
| HO397_RS12660 (HO397_12660) | csiR | 2605994..2606656 (+) | 663 | WP_000156811.1 | DNA-binding transcriptional regulator CsiR | - |
| HO397_RS12665 (HO397_12665) | kbp | 2606657..2607106 (-) | 450 | WP_000522424.1 | potassium binding protein Kbp | - |
| HO397_RS12670 (HO397_12670) | yqaE | 2607190..2607348 (-) | 159 | WP_000508177.1 | YqaE/Pmp3 family membrane protein | - |
| HO397_RS12675 (HO397_12675) | ygaV | 2607531..2607830 (+) | 300 | WP_000137280.1 | metalloregulator ArsR/SmtB family transcription factor | - |
| HO397_RS12680 (HO397_12680) | ygaP | 2607840..2608364 (+) | 525 | WP_001229445.1 | thiosulfate sulfurtransferase YgaP | - |
| HO397_RS12685 (HO397_12685) | stpA | 2608411..2608815 (-) | 405 | WP_000115383.1 | DNA-binding protein StpA | - |
| HO397_RS12690 (HO397_12690) | alaE | 2609483..2609932 (+) | 450 | WP_000492656.1 | L-alanine exporter AlaE | - |
| HO397_RS12695 (HO397_12695) | ygaC | 2609969..2610313 (-) | 345 | WP_000281320.1 | DUF2002 family protein | - |
| HO397_RS12700 (HO397_12700) | ygaM | 2610465..2610794 (+) | 330 | WP_001295174.1 | DUF883 domain-containing protein | - |
| HO397_RS12705 (HO397_12705) | nrdH | 2611042..2611287 (+) | 246 | WP_001223227.1 | glutaredoxin-like protein NrdH | - |
| HO397_RS12710 (HO397_12710) | nrdI | 2611284..2611694 (+) | 411 | WP_000080947.1 | class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI | - |
| HO397_RS12715 (HO397_12715) | nrdE | 2611667..2613811 (+) | 2145 | WP_000246527.1 | class 1b ribonucleoside-diphosphate reductase subunit alpha | - |
| HO397_RS12720 (HO397_12720) | nrdF | 2613821..2614780 (+) | 960 | WP_000777972.1 | class 1b ribonucleoside-diphosphate reductase subunit beta | - |
| HO397_RS12725 (HO397_12725) | proV | 2615134..2616336 (+) | 1203 | WP_000985494.1 | glycine betaine/L-proline ABC transporter ATP-binding protein ProV | - |
| HO397_RS12730 (HO397_12730) | proW | 2616329..2617393 (+) | 1065 | WP_000774988.1 | glycine betaine/L-proline ABC transporter permease ProW | - |
| HO397_RS12735 (HO397_12735) | proX | 2617451..2618443 (+) | 993 | WP_001216521.1 | glycine betaine/L-proline ABC transporter substrate-binding protein ProX | - |
| HO397_RS12740 (HO397_12740) | - | 2618735..2619919 (+) | 1185 | WP_000165699.1 | MFS transporter | - |
| HO397_RS12745 (HO397_12745) | ygaZ | 2620043..2620780 (+) | 738 | WP_000445651.1 | L-valine exporter subunit YgaZ | - |
| HO397_RS12750 (HO397_12750) | ygaH | 2620770..2621105 (+) | 336 | WP_000119763.1 | L-valine transporter subunit YgaH | - |
| HO397_RS12755 (HO397_12760) | emrR | 2621196..2621726 (+) | 531 | WP_000378442.1 | multidrug efflux transporter EmrAB transcriptional repressor EmrR | - |
| HO397_RS12760 (HO397_12765) | emrA | 2621853..2623025 (+) | 1173 | WP_001295175.1 | multidrug efflux MFS transporter periplasmic adaptor subunit EmrA | - |
| HO397_RS12765 (HO397_12770) | emrB | 2623042..2624580 (+) | 1539 | WP_001295176.1 | multidrug efflux MFS transporter permease subunit EmrB | - |
| HO397_RS12770 (HO397_12775) | luxS | 2624644..2625159 (-) | 516 | WP_001130211.1 | S-ribosylhomocysteine lyase | - |
| HO397_RS12775 (HO397_12780) | gshA | 2625309..2626865 (-) | 1557 | WP_000611804.1 | glutamate--cysteine ligase | - |
| HO397_RS12780 (HO397_12785) | yqaA | 2626938..2627366 (-) | 429 | WP_001287454.1 | YqaA family protein | - |
| HO397_RS12785 (HO397_12790) | yqaB | 2627363..2627929 (-) | 567 | WP_000273290.1 | fructose-1-phosphate/6-phosphogluconate phosphatase | - |
| HO397_RS12815 (HO397_12820) | csrA | 2629387..2629572 (-) | 186 | WP_000906486.1 | carbon storage regulator CsrA | - |
| HO397_RS12820 (HO397_12825) | alaS | 2629807..2632437 (-) | 2631 | WP_000047185.1 | alanine--tRNA ligase | - |
| HO397_RS12825 (HO397_12830) | recX | 2632565..2633065 (-) | 501 | WP_000140508.1 | recombination regulator RecX | - |
| HO397_RS12830 (HO397_12835) | recA | 2633134..2634195 (-) | 1062 | WP_000963143.1 | recombinase RecA | Machinery gene |
| HO397_RS12835 (HO397_12840) | pncC | 2634275..2634772 (-) | 498 | WP_000132231.1 | nicotinamide-nucleotide amidase | - |
| HO397_RS12840 (HO397_12845) | mltB | 2634917..2636002 (-) | 1086 | WP_001301333.1 | lytic murein transglycosylase B | - |
| HO397_RS12845 (HO397_12850) | srlA | 2636258..2636821 (+) | 564 | WP_000573321.1 | PTS glucitol/sorbitol transporter subunit IIC | - |
| HO397_RS12850 (HO397_12855) | srlE | 2636818..2637777 (+) | 960 | WP_000148867.1 | PTS glucitol/sorbitol transporter subunit IIB | - |
| HO397_RS12855 (HO397_12860) | srlB | 2637788..2638159 (+) | 372 | WP_000216210.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| HO397_RS12860 (HO397_12865) | srlD | 2638163..2638942 (+) | 780 | WP_001077351.1 | sorbitol-6-phosphate dehydrogenase | - |
| HO397_RS12865 (HO397_12870) | gutM | 2639048..2639407 (+) | 360 | WP_000252907.1 | transcriptional regulator GutM | - |
| HO397_RS12870 (HO397_12875) | srlR | 2639474..2640247 (+) | 774 | WP_000804550.1 | glucitol operon DNA-binding transcriptional repressor SrlR | - |
| HO397_RS12875 (HO397_12880) | gutQ | 2640240..2641205 (+) | 966 | WP_001287420.1 | arabinose-5-phosphate isomerase GutQ | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37973.37 Da Isoelectric Point: 4.8171
>NTDB_id=445414 HO397_RS12830 WP_000963143.1 2633134..2634195(-) (recA) [Escherichia coli BL21]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF
Nucleotide
Download Length: 1062 bp
>NTDB_id=445414 HO397_RS12830 WP_000963143.1 2633134..2634195(-) (recA) [Escherichia coli BL21]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTGCCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGCTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGTATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCGCCGTTTAAACAGGCTGAATTCCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCGACTGCCTGGCTGAAAGATAACCCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGATAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.