Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HJG54_RS04875 Genome accession   NZ_CP053586
Coordinates   1266388..1267461 (+) Length   357 a.a.
NCBI ID   WP_036002305.1    Uniprot ID   -
Organism   Leptolyngbya sp. NK1-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261388..1272461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HJG54_RS04850 (HJG54_04865) recQ 1261765..1263639 (-) 1875 WP_316433690.1 DNA helicase RecQ -
  HJG54_RS04860 (HJG54_04875) ureA 1264077..1264379 (+) 303 WP_036002301.1 urease subunit gamma -
  HJG54_RS04865 (HJG54_04880) - 1264432..1264719 (-) 288 WP_316433691.1 exodeoxyribonuclease VII small subunit -
  HJG54_RS04870 (HJG54_04885) xseA 1264751..1266016 (-) 1266 WP_316433692.1 exodeoxyribonuclease VII large subunit -
  HJG54_RS04875 (HJG54_04890) recA 1266388..1267461 (+) 1074 WP_036002305.1 recombinase RecA Machinery gene
  HJG54_RS04880 (HJG54_04895) - 1267531..1268274 (-) 744 WP_316433693.1 hypothetical protein -
  HJG54_RS04885 (HJG54_04900) panB 1268657..1269448 (+) 792 WP_316433694.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  HJG54_RS04890 (HJG54_04905) - 1269755..1270081 (-) 327 WP_036002313.1 hypothetical protein -
  HJG54_RS04895 (HJG54_04910) bchI 1270217..1271314 (-) 1098 WP_316433696.1 magnesium chelatase ATPase subunit I -
  HJG54_RS04900 (HJG54_04915) - 1271532..1271843 (+) 312 WP_316433698.1 hypothetical protein -
  HJG54_RS04905 - 1271843..1272217 (+) 375 WP_316433700.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38561.74 Da        Isoelectric Point: 4.8120

>NTDB_id=445269 HJG54_RS04875 WP_036002305.1 1266388..1267461(+) (recA) [Leptolyngbya sp. NK1-12]
MAKTSNETSERDKALNLVLTQIDRTFGKGTIMRLGDATRMRVETIPSGALTLDLALGGGLPKGRIIEIYGPESSGKTTLA
LHAVAEVQKGGGVAAYVDAEHALDPTYSAALGVDIGNLLISQPDTGEQALEIVDQLVRSNAIDIVVVDSVAALVPRAEIE
GEMGDAHVGLQARLMSQALRKITGNIGKTGCSVIFINQLRQKIGVSYGNPETTTGGNALKFYASVRLDIRRIQTLKKGNE
EYGTRAKVKVAKNKIAPPFRIAEFDIIFGKGISTMGCLVDLAEETGVIVRRGAWYSYNGENISQGRDNAVKYFEENPNFA
KDIEQQVRQKLEMGAVVSANSVAPMDEDDELEDYEEE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=445269 HJG54_RS04875 WP_036002305.1 1266388..1267461(+) (recA) [Leptolyngbya sp. NK1-12]
ATGGCTAAAACCAGTAATGAAACGTCTGAGCGCGATAAAGCCTTAAATTTAGTTTTGACCCAGATTGATCGCACCTTTGG
CAAGGGCACTATCATGCGGCTGGGAGATGCGACCCGGATGCGGGTTGAAACCATTCCCAGTGGGGCACTCACTCTAGATC
TAGCCCTAGGCGGCGGATTGCCCAAGGGCCGGATTATCGAAATCTACGGTCCAGAAAGCTCTGGTAAAACCACGCTGGCT
CTGCATGCGGTAGCCGAAGTTCAGAAAGGCGGTGGTGTAGCAGCCTATGTAGACGCAGAACATGCCCTCGATCCCACCTA
CTCGGCAGCCCTGGGGGTCGATATTGGCAATTTGCTGATTTCCCAGCCCGATACGGGAGAACAGGCGCTAGAAATCGTCG
ATCAGTTGGTGCGGTCCAACGCGATTGACATTGTGGTCGTGGACTCGGTGGCGGCGCTTGTACCCAGAGCCGAGATCGAG
GGAGAGATGGGAGATGCTCATGTCGGCTTGCAGGCCCGTTTGATGAGCCAAGCTCTGCGGAAAATTACCGGTAATATCGG
TAAAACCGGCTGTAGCGTGATTTTTATTAACCAGCTCCGGCAGAAGATCGGCGTCAGCTACGGTAACCCAGAGACCACTA
CGGGCGGCAATGCGCTTAAGTTCTACGCTTCGGTGCGGTTGGATATTCGCCGGATTCAAACCCTGAAGAAAGGGAACGAA
GAATATGGCACCCGCGCCAAGGTGAAGGTGGCTAAAAACAAAATTGCCCCGCCGTTCCGCATCGCCGAGTTTGATATTAT
CTTCGGCAAGGGCATTTCGACGATGGGCTGCTTGGTGGATTTGGCCGAGGAAACTGGAGTAATTGTACGGCGAGGAGCTT
GGTATAGCTACAACGGGGAGAACATCAGCCAAGGCCGCGACAATGCCGTCAAATACTTCGAGGAGAATCCAAACTTTGCC
AAGGATATCGAGCAGCAGGTGCGGCAAAAGTTAGAGATGGGAGCGGTAGTCTCCGCCAACTCGGTTGCGCCGATGGATGA
GGACGACGAGCTGGAAGATTATGAAGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(13-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

62.536

97.199

0.608
  recA Ralstonia pseudosolanacearum GMI1000

62.791

96.359

0.605
  recA Pseudomonas stutzeri DSM 10701

63.529

95.238

0.605
  recA Acinetobacter baumannii D1279779

65.528

90.196

0.591
  recA Glaesserella parasuis strain SC1401

59.322

99.16

0.588
  recA Streptococcus pneumoniae R6

56.131

100

0.577
  recA Streptococcus pneumoniae Rx1

56.131

100

0.577
  recA Streptococcus pneumoniae D39

56.131

100

0.577
  recA Streptococcus pneumoniae TIGR4

56.131

100

0.577
  recA Streptococcus mitis NCTC 12261

56.474

100

0.574
  recA Streptococcus mitis SK321

56.474

100

0.574
  recA Neisseria gonorrhoeae MS11

62.539

90.476

0.566
  recA Neisseria gonorrhoeae MS11

62.539

90.476

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

62.539

90.476

0.566
  recA Neisseria gonorrhoeae strain FA1090

62.539

90.476

0.566
  recA Bacillus subtilis subsp. subtilis str. 168

62.112

90.196

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.651

95.518

0.56
  recA Helicobacter pylori 26695

57.471

97.479

0.56
  recA Helicobacter pylori strain NCTC11637

57.471

97.479

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.391

96.639

0.555
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.559

90.196

0.546
  recA Vibrio cholerae strain A1552

60.559

90.196

0.546
  recA Streptococcus mutans UA159

60.185

90.756

0.546
  recA Streptococcus pyogenes NZ131

59.021

91.597

0.541
  recA Lactococcus lactis subsp. cremoris KW2

57.576

92.437

0.532
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.38

94.398

0.532